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Human disease related genes
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TBC1D9B
ENSSSCG00000014014
ENSG00000197226
TBC1 domain family member 9B
Low tissue specificity
Detected in all
TBK1
ENSSSCG00000031103
ENSG00000183735
Serine/threonine-protein kinase TBK1
Low tissue specificity
Detected in all
TBX1
ENSSSCG00000037762
ENSG00000184058
T-box 1
Tissue enhanced
Detected in many
mouth:
31.0
skin:
39.2
TBX2
ENSSSCG00000027060
ENSG00000121068
T-box transcription factor TBX2
Tissue enhanced
Detected in many
male glands:
41.4
TBX3
ENSSSCG00000009865
ENSG00000135111
T-box 3
Tissue enhanced
Detected in many
adrenal gland:
41.2
male glands:
87.6
thyroid gland:
38.6
TBXA2R
ENSSSCG00000033759
ENSG00000006638
Thromboxane A2 receptor
Tissue enriched
Detected in many
lymphoid tissue:
48.8
TCAP
ENSSSCG00000017500
ENSG00000173991
Telethonin
Tissue enhanced
Detected in some
heart:
177.0
male glands:
53.1
skeletal muscle:
200.9
TCEA3
ENSSSCG00000032674
ENSG00000204219
Transcription elongation factor A3
Tissue enhanced
Detected in many
male glands:
79.9
skeletal muscle:
56.6
TCF12
ENSSSCG00000004600
ENSG00000140262
Transcription factor 12
Tissue enhanced
Detected in all
lymphoid tissue:
84.4
TCF19
ENSSSCG00000001392
ENSG00000137310
Transcription factor 19
Tissue enhanced
Detected in many
lymphoid tissue:
11.0
TCF21
ENSSSCG00000033258
ENSG00000118526
Transcription factor 21
Tissue enhanced
Detected in many
urinary bladder:
18.7
TCF7
ENSSSCG00000030680
ENSG00000081059
Transcription factor 7
Tissue enriched
Detected in many
lymphoid tissue:
169.9
TCF7L1
ENSSSCG00000008241
ENSG00000152284
Transcription factor 7 like 1
Low tissue specificity
Detected in all
TCF7L2
ENSSSCG00000010638
ENSG00000148737
Transcription factor 7 like 2
Low tissue specificity
Detected in all
TCIM
ENSSSCG00000032320
ENSG00000176907
Transcriptional and immune response regulator
Tissue enhanced
Detected in many
adipose tissue:
62.0
bone marrow:
73.2
TDRD10
ENSSSCG00000006546
ENSG00000163239
Tudor domain-containing protein 10
Low tissue specificity
Detected in many
TEAD1
ENSSSCG00000013399
ENSG00000187079
Transcriptional enhancer factor TEF-1
Tissue enhanced
Detected in all
skeletal muscle:
79.7
TEAD3
ENSSSCG00000001544
ENSG00000007866
Transcriptional enhancer factor TEF-5
Low tissue specificity
Detected in all
TEAD4
ENSSSCG00000000736
ENSG00000197905
Transcriptional enhancer factor TEF-3
Tissue enhanced
Detected in many
mesothelial tissue:
35.0
skeletal muscle:
49.7
TEC
ENSSSCG00000008820
ENSG00000135605
Tec protein tyrosine kinase
Low tissue specificity
Detected in many
TEF
ENSSSCG00000035152
ENSG00000167074
TEF, PAR bZIP transcription factor
Low tissue specificity
Detected in all
TEK
ENSSSCG00000005122
ENSG00000120156
TEK receptor tyrosine kinase
Low tissue specificity
Detected in many
TEN1
ENSSSCG00000017194
ENSG00000257949
TEN1, CST complex subunit
Low tissue specificity
Detected in all
TENM1
ENSSSCG00000012644
ENSG00000009694
Teneurin transmembrane protein 1
Tissue enhanced
Detected in many
brain:
32.8
epididymis:
13.9
thyroid gland:
29.0
TESC
ENSSSCG00000009859
ENSG00000088992
Tescalcin
Tissue enhanced
Detected in many
male glands:
41.5
salivary gland:
93.2
TESK2
ENSSSCG00000003917
ENSG00000070759
Testis-specific kinase 2
Tissue enriched
Detected in all
lens:
130.5
TESPA1
ENSSSCG00000000299
ENSG00000135426
Thymocyte expressed, positive selection associated 1
Tissue enhanced
Detected in all
lymphoid tissue:
105.1
TEX26
ENSSSCG00000009332
ENSG00000175664
Testis expressed 26
Tissue enhanced
Detected in many
fallopian tube:
24.6
mesothelial tissue:
20.7
testis:
45.8
TEX9
ENSSSCG00000004602
ENSG00000151575
Testis-expressed sequence 9 protein
Tissue enhanced
Detected in all
skeletal muscle:
82.2
TFAP2A
ENSSSCG00000001036
ENSG00000137203
Transcription factor AP-2 alpha
Tissue enhanced
Detected in many
epididymis:
64.5
male glands:
52.5
skin:
56.0
TFCP2L1
ENSSSCG00000015732
ENSG00000115112
Transcription factor CP2 like 1
Tissue enhanced
Detected in many
kidney:
72.4
salivary gland:
96.6
upper respiratory system:
48.5
TFDP2
ENSSSCG00000037647
ENSG00000114126
Transcription factor Dp-2
Tissue enhanced
Detected in all
lymphoid tissue:
47.7
TFEB
ENSSSCG00000001621
ENSG00000112561
Transcription factor EB
Low tissue specificity
Detected in all
TFEC
ENSSSCG00000038138
ENSG00000105967
Transcription factor EC
Tissue enhanced
Detected in many
kidney:
29.7
lymphoid tissue:
40.3
TFF3
ENSSSCG00000022857
ENSG00000160180
Trefoil factor 3 precursor
Group enriched
Detected in many
male glands:
394.8
upper respiratory system:
123.4
TFPI2
ENSSSCG00000015322
ENSG00000105825
Tissue factor pathway inhibitor 2
Tissue enhanced
Detected in many
adipose tissue:
67.0
ovary:
75.3
TG
ENSSSCG00000005948
ENSG00000042832
Thyroglobulin precursor
Tissue enriched
Detected in some
thyroid gland:
1006.8
TGFB1I1
ENSSSCG00000035952
ENSG00000140682
Transforming growth factor beta 1 induced transcript 1
Tissue enhanced
Detected in many
cervix:
62.0
smooth muscle:
86.2
TGFB3
ENSSSCG00000002385
ENSG00000119699
Transforming growth factor beta-3 precursor
Tissue enhanced
Detected in many
cartilage:
37.8
penis:
51.2
TGFBI
ENSSSCG00000014316
ENSG00000120708
Transforming growth factor beta induced
Tissue enhanced
Detected in many
cartilage:
147.5
cornea:
213.4
TGFBR3
ENSSSCG00000006911
ENSG00000069702
Transforming growth factor beta receptor type 3 precursor
Low tissue specificity
Detected in all
TGM2
ENSSSCG00000023522
ENSG00000198959
Transglutaminase 2
Low tissue specificity
Detected in many
THBD
ENSSSCG00000007115
ENSG00000178726
Thrombomodulin precursor
Tissue enhanced
Detected in many
mesothelial tissue:
74.0
THBS1
ENSSSCG00000004789
ENSG00000137801
Thrombospondin-1 precursor
Tissue enhanced
Detected in many
male glands:
224.8
ovary:
175.2
THBS2
ENSSSCG00000004012
ENSG00000186340
Thrombospondin 2
Tissue enhanced
Detected in many
cornea:
56.1
dura mater:
89.5
THEMIS
ENSSSCG00000024392
ENSG00000172673
Thymocyte selection associated
Tissue enriched
Detected in some
lymphoid tissue:
49.1
THRA
ENSSSCG00000035969
ENSG00000126351
Thyroid hormone receptor alpha
Low tissue specificity
Detected in all
THSD7A
ENSSSCG00000015350
ENSG00000005108
Thrombospondin type 1 domain containing 7A
Tissue enhanced
Detected in many
brain:
39.6
THY1
ENSSSCG00000032330
ENSG00000154096
Thy-1 membrane glycoprotein precursor
Tissue enhanced
Detected in many
brain:
89.5
TIAM1
ENSSSCG00000012034
ENSG00000156299
T cell lymphoma invasion and metastasis 1
Tissue enhanced
Detected in many
brain:
111.2
skin:
29.9
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