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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SDC4
ENSSSCG00000038594
ENSG00000124145
Syndecan-4
Tissue enhanced
Detected in all
ovary:
95.3
SDCBP2
ENSSSCG00000007189
ENSG00000125775
Syntenin-2
Tissue enhanced
Detected in many
endometrium:
20.0
gallbladder:
34.5
large intestine:
20.9
SDK1
ENSSSCG00000007574
ENSG00000146555
Sidekick cell adhesion molecule 1
Tissue enhanced
Detected in many
lens:
57.1
SDK2
ENSSSCG00000017244
ENSG00000069188
Sidekick cell adhesion molecule 2
Tissue enhanced
Detected in many
cartilage:
46.4
SELENBP1
ENSSSCG00000006624
ENSG00000143416
Selenium binding protein 1
Tissue enhanced
Detected in all
large intestine:
122.7
skin:
83.9
SELENOM
ENSSSCG00000029781
ENSG00000198832
Selenoprotein M precursor
Tissue enhanced
Detected in many
ovary:
102.6
SELENOP
ENSSSCG00000021208
ENSG00000250722
Selenoprotein P precursor
Tissue enhanced
Detected in all
liver:
184.0
ovary:
174.6
SELL
ENSSSCG00000006287
ENSG00000188404
L-selectin precursor
Tissue enhanced
Detected in all
lymphoid tissue:
36.6
SELP
ENSSSCG00000006288
ENSG00000174175
P-selectin precursor
Low tissue specificity
Detected in many
SEMA3A
ENSSSCG00000015398
ENSG00000075213
Semaphorin 3A
Tissue enriched
Detected in many
cartilage:
141.5
SEMA3B
ENSSSCG00000011400
ENSG00000012171
Semaphorin 3B
Tissue enhanced
Detected in many
vagus nerve:
112.4
SEMA3D
ENSSSCG00000015396
ENSG00000153993
Semaphorin 3D
Group enriched
Detected in many
cartilage:
103.9
thyroid gland:
27.0
SEMA4C
ENSSSCG00000008197
ENSG00000168758
Semaphorin 4C
Tissue enhanced
Detected in all
vagus nerve:
60.1
SEMA4F
ENSSSCG00000008262
ENSG00000135622
Ssemaphorin 4F
Low tissue specificity
Detected in many
SEMA5A
ENSSSCG00000017095
ENSG00000112902
Semaphorin 5A
Tissue enhanced
Detected in many
lens:
89.0
SEMA6A
ENSSSCG00000014224
ENSG00000092421
Semaphorin 6A
Low tissue specificity
Detected in many
SEMA7A
ENSSSCG00000023165
ENSG00000138623
Semaphorin 7A (John Milton Hagen blood group)
Tissue enhanced
Detected in many
lymphoid tissue:
35.5
ovary:
49.9
SEPT3
ENSSSCG00000000040
ENSG00000100167
Septin 3
Tissue enhanced
Detected in all
brain:
67.7
testis:
47.2
SEPT4
ENSSSCG00000017643
ENSG00000108387
Septin 4
Tissue enriched
Detected in many
brain:
117.5
SERHL2
ENSSSCG00000034350
ENSG00000183569
Serine hydrolase like 2
Tissue enhanced
Detected in all
kidney:
41.1
pineal gland:
38.9
SERINC2
ENSSSCG00000023585
ENSG00000168528
Serine incorporator 2 precursor
Tissue enhanced
Detected in many
kidney:
49.3
stomach:
57.8
SERPINB5
ENSSSCG00000004894
ENSG00000206075
Serpin family B member 5
Group enriched
Detected in many
cornea:
99.2
mouth:
57.1
skin:
46.7
SERPINE1
ENSSSCG00000025698
ENSG00000106366
Plasminogen activator inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
397.7
SERPINE2
ENSSSCG00000016233
ENSG00000135919
Glia-derived nexin precursor
Group enriched
Detected in many
cartilage:
193.9
ovary:
110.5
SERPINF1
ENSSSCG00000017818
ENSG00000132386
Pigment epithelium-derived factor precursor
Tissue enhanced
Detected in many
dura mater:
113.5
liver:
131.6
SERPING1
ENSSSCG00000013181
ENSG00000149131
Plasma protease C1 inhibitor precursor
Tissue enhanced
Detected in all
liver:
234.9
SERPINH1
ENSSSCG00000039468
ENSG00000149257
Serpin H1 precursor
Tissue enhanced
Detected in all
ovary:
137.3
SFRP4
ENSSSCG00000035299
ENSG00000106483
Secreted frizzled-related protein 4 precursor
Tissue enhanced
Detected in many
dura mater:
134.2
upper respiratory system:
41.4
vagus nerve:
48.3
SFRP5
ENSSSCG00000010529
ENSG00000120057
Secreted frizzled-related protein 5 precursor
Tissue enhanced
Detected in many
adipose tissue:
50.7
choroid plexus:
112.8
vagus nerve:
88.5
SGIP1
ENSSSCG00000025243
ENSG00000118473
SH3 domain GRB2 like endophilin interacting protein 1
Tissue enhanced
Detected in many
brain:
34.6
pineal gland:
21.7
retina:
74.1
SGK2
ENSSSCG00000024325
ENSG00000101049
SGK2, serine/threonine kinase 2
Tissue enhanced
Detected in many
adipose tissue:
85.4
brain:
31.5
kidney:
33.0
SGMS2
ENSSSCG00000009152
ENSG00000164023
Sphingomyelin synthase 2
Tissue enhanced
Detected in all
choroid plexus:
40.1
SGO1
ENSSSCG00000011207
ENSG00000129810
Shugoshin 1
Tissue enhanced
Detected in many
lymphoid tissue:
23.9
SGO2
ENSSSCG00000016092
ENSG00000163535
Shugoshin 2
Tissue enhanced
Detected in all
testis:
50.1
SGSH
ENSSSCG00000017152
ENSG00000181523
N-sulfoglucosamine sulfohydrolase
Low tissue specificity
Detected in all
SGSM1
ENSSSCG00000009951
ENSG00000167037
Small G protein signaling modulator 1
Tissue enhanced
Detected in all
brain:
33.8
stomach:
33.6
SGSM3
ENSSSCG00000000076
ENSG00000100359
Small G protein signaling modulator 3
Tissue enhanced
Detected in all
stomach:
58.9
SH2B2
ENSSSCG00000007682
ENSG00000160999
SH2B adaptor protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
33.6
SH2B3
ENSSSCG00000009833
ENSG00000111252
SH2B adaptor protein 3
Low tissue specificity
Detected in all
SH2D1A
ENSSSCG00000012643
ENSG00000183918
SH2 domain-containing protein 1A
Tissue enriched
Detected in all
lymphoid tissue:
73.7
SH2D1B
ENSSSCG00000032108
ENSG00000198574
SH2 domain containing 1B
Tissue enhanced
Detected in all
male glands:
29.3
SH3BGR
ENSSSCG00000029219
ENSG00000185437
SH3 domain-binding glutamic acid-rich protein
Tissue enhanced
Detected in many
heart:
42.7
skeletal muscle:
85.0
smooth muscle:
46.7
SH3BGRL2
ENSSSCG00000032015
ENSG00000198478
SH3 domain binding glutamate rich protein like 2
Tissue enhanced
Detected in many
large intestine:
64.3
lens:
119.2
SH3BP2
ENSSSCG00000022004
ENSG00000087266
SH3 domain binding protein 2
Low tissue specificity
Detected in many
SH3BP5
ENSSSCG00000024938
ENSG00000131370
SH3 domain binding protein 5
Low tissue specificity
Detected in all
SH3D19
ENSSSCG00000009018
ENSG00000109686
SH3 domain containing 19
Low tissue specificity
Detected in many
SH3PXD2A
ENSSSCG00000010604
ENSG00000107957
SH3 and PX domains 2A
Low tissue specificity
Detected in many
SH3PXD2B
ENSSSCG00000027378
ENSG00000174705
SH3 and PX domains 2B
Low tissue specificity
Detected in all
SH3RF2
ENSSSCG00000014410
ENSG00000156463
SH3 domain containing ring finger 2
Tissue enhanced
Detected in many
skin:
72.0
SHANK2
ENSSSCG00000033043
ENSG00000162105
SH3 and multiple ankyrin repeat domains 2
Tissue enhanced
Detected in many
male glands:
66.4
salivary gland:
69.2
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