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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ROBO1
ENSSSCG00000012001
ENSG00000169855
Roundabout guidance receptor 1
Tissue enhanced
Detected in many
brain:
33.2
cartilage:
33.8
ovary:
33.1
ROBO2
ENSSSCG00000012002
ENSG00000185008
Roundabout guidance receptor 2
Tissue enhanced
Detected in many
brain:
27.0
retina:
23.6
ROR1
ENSSSCG00000003811
ENSG00000185483
Receptor tyrosine kinase like orphan receptor 1
Tissue enhanced
Detected in many
lens:
31.7
RORC
ENSSSCG00000026427
ENSG00000143365
RAR related orphan receptor C
Tissue enhanced
Detected in many
liver:
41.5
lymphoid tissue:
53.4
male glands:
45.5
RPGRIP1
ENSSSCG00000002129
ENSG00000092200
RPGR interacting protein 1
Group enriched
Detected in many
epididymis:
15.0
retina:
21.4
testis:
51.9
RPS6KA1
ENSSSCG00000003558
ENSG00000117676
Ribosomal protein S6 kinase alpha-1
Tissue enhanced
Detected in many
large intestine:
38.7
RPS6KA2
ENSSSCG00000004022
ENSG00000071242
Ribosomal protein S6 kinase A2
Tissue enhanced
Detected in many
brain:
32.2
lens:
49.4
RRAS
ENSSSCG00000003183
ENSG00000126458
RAS related
Tissue enhanced
Detected in all
smooth muscle:
113.4
RRBP1
ENSSSCG00000024692
ENSG00000125844
Ribosome binding protein 1
Tissue enhanced
Detected in all
epididymis:
76.3
RTKN2
ENSSSCG00000039707
ENSG00000182010
Rhotekin 2
Tissue enhanced
Detected in many
lung:
27.1
lymphoid tissue:
22.1
testis:
13.9
RUNX1T1
ENSSSCG00000006115
ENSG00000079102
RUNX1 translocation partner 1
Low tissue specificity
Detected in all
RUSC2
ENSSSCG00000005308
ENSG00000198853
RUN and SH3 domain containing 2
Low tissue specificity
Detected in all
RXFP4
ENSSSCG00000006503
ENSG00000173080
Relaxin-3 receptor 2
Tissue enhanced
Detected in many
cartilage:
15.9
RXRA
ENSSSCG00000038220
ENSG00000186350
Retinoid X receptor alpha
Low tissue specificity
Detected in all
RYR2
ENSSSCG00000010142
ENSG00000198626
Ryanodine receptor 2
Tissue enriched
Detected in many
heart:
143.0
S100A1
ENSSSCG00000031053
ENSG00000160678
S100 calcium binding protein A1
Tissue enhanced
Detected in many
brain:
250.1
cartilage:
96.8
pineal gland:
70.9
S100A12
ENSSSCG00000032857
ENSG00000163221
Protein S100-A12
Tissue enriched
Detected in some
cornea:
228.2
S100A13
ENSSSCG00000038991
ENSG00000189171
S100 calcium binding protein A13
Tissue enriched
Detected in all
male glands:
118.5
S100A14
ENSSSCG00000006582
ENSG00000189334
Protein S100-A14
Tissue enhanced
Detected in many
brain:
42.6
cornea:
41.1
mouth:
54.2
stomach:
44.6
S100A2
ENSSSCG00000006580
ENSG00000196754
S100 calcium binding protein A2
Tissue enhanced
Detected in many
mouth:
105.0
skin:
69.0
S100A8
ENSSSCG00000006590
ENSG00000143546
Protein S100-A8
Group enriched
Detected in some
cornea:
459.9
mouth:
180.6
S100A9
ENSSSCG00000006588
ENSG00000163220
RNA-binding region containing protein 2-like
Tissue enhanced
Detected in some
bone marrow:
31.5
cornea:
126.7
mouth:
117.6
S1PR1
ENSSSCG00000029849
ENSG00000170989
Sphingosine-1-phosphate receptor 1
Low tissue specificity
Detected in all
S1PR3
ENSSSCG00000009580
ENSG00000213694
Sphingosine-1-phosphate receptor 3
Tissue enhanced
Detected in many
lens:
30.8
ovary:
50.9
SALL2
ENSSSCG00000022705
ENSG00000165821
Spalt like transcription factor 2
Tissue enhanced
Detected in many
brain:
41.7
pituitary gland:
29.5
SAMD11
ENSSSCG00000033509
ENSG00000187634
Sterile alpha motif domain containing 11
Tissue enriched
Detected in many
retina:
108.3
SAMD13
ENSSSCG00000026005
ENSG00000203943
Sterile alpha motif domain containing 13
Tissue enhanced
Detected in many
lymphoid tissue:
18.0
testis:
19.4
SAMD3
ENSSSCG00000004202
ENSG00000164483
Sterile alpha motif domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
13.6
SAMD4A
ENSSSCG00000023408
ENSG00000020577
Sterile alpha motif domain containing 4A
Tissue enhanced
Detected in many
testis:
79.6
SAMD5
ENSSSCG00000004112
ENSG00000203727
Sterile alpha motif domain containing 5
Tissue enhanced
Detected in many
vagus nerve:
47.2
SAMHD1
ENSSSCG00000027806
ENSG00000101347
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1
Tissue enhanced
Detected in all
male glands:
89.0
SAPCD1
ENSSSCG00000036076
ENSG00000228727
Suppressor APC domain containing 1
Tissue enriched
Detected in many
lens:
82.1
SASH1
ENSSSCG00000033175
ENSG00000111961
SAM and SH3 domain containing 1
Low tissue specificity
Detected in all
SASS6
ENSSSCG00000028821
ENSG00000156876
SAS-6 centriolar assembly protein
Tissue enhanced
Detected in all
liver:
34.5
lymphoid tissue:
27.4
SATB1
ENSSSCG00000011201
ENSG00000182568
SATB homeobox 1
Tissue enriched
Detected in many
lymphoid tissue:
199.2
SBSPON
ENSSSCG00000006183
ENSG00000164764
Somatomedin B and thrombospondin type 1 domain containing
Low tissue specificity
Detected in all
SCARA5
ENSSSCG00000009672
ENSG00000168079
Scavenger receptor class A member 5
Tissue enhanced
Detected in many
dura mater:
48.8
SCARF2
ENSSSCG00000010109
ENSG00000244486
Scavenger receptor class F member 2
Low tissue specificity
Detected in many
SCD
ENSSSCG00000010554
ENSG00000099194
Acyl-CoA desaturase
Tissue enhanced
Detected in many
adipose tissue:
174.7
aorta:
147.9
bone marrow:
192.1
SCEL
ENSSSCG00000009474
ENSG00000136155
Sciellin
Tissue enhanced
Detected in many
cornea:
18.9
mouth:
63.1
skin:
32.3
SCG5
ENSSSCG00000004807
ENSG00000166922
Neuroendocrine protein 7B2 precursor
Tissue enhanced
Detected in many
brain:
32.2
pineal gland:
43.6
pituitary gland:
90.2
SCIMP
ENSSSCG00000017896
ENSG00000161929
SLP adaptor and CSK interacting membrane protein
Tissue enhanced
Detected in many
lung:
16.2
lymphoid tissue:
37.2
upper respiratory system:
19.5
SCMH1
ENSSSCG00000003971
ENSG00000010803
Scm polycomb group protein homolog 1
Low tissue specificity
Detected in all
SCML2
ENSSSCG00000012155
ENSG00000102098
Scm polycomb group protein like 2
Tissue enhanced
Detected in all
testis:
26.0
SCN1B
ENSSSCG00000023267
ENSG00000105711
Sodium voltage-gated channel beta subunit 1
Group enriched
Detected in many
brain:
99.0
skeletal muscle:
52.5
SCPEP1
ENSSSCG00000017617
ENSG00000121064
Serine carboxypeptidase 1
Low tissue specificity
Detected in all
SCUBE1
ENSSSCG00000000029
ENSG00000159307
Signal peptide, CUB domain and EGF like domain containing 1
Tissue enhanced
Detected in many
cervix:
50.6
endometrium:
43.3
SDC1
ENSSSCG00000008601
ENSG00000115884
Syndecan-1 precursor
Tissue enhanced
Detected in many
cornea:
68.8
gallbladder:
85.8
ovary:
105.1
SDC2
ENSSSCG00000006088
ENSG00000169439
Syndecan-2 precursor
Tissue enhanced
Detected in all
cornea:
91.0
liver:
65.9
SDC3
ENSSSCG00000003592
ENSG00000162512
Syndecan 3
Tissue enhanced
Detected in all
brain:
64.9
cartilage:
42.7
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