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Human disease related genes
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Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RASSF2
ENSSSCG00000032601
ENSG00000101265
Ras association domain family member 2
Tissue enhanced
Detected in all
dura mater:
59.9
RASSF9
ENSSSCG00000034948
ENSG00000198774
Ras association domain family member 9
Low tissue specificity
Detected in all
RBM38
ENSSSCG00000007504
ENSG00000132819
RNA-binding protein 38
Tissue enhanced
Detected in many
lens:
142.6
skeletal muscle:
42.7
RBM47
ENSSSCG00000008796
ENSG00000163694
RNA binding motif protein 47
Low tissue specificity
Detected in many
RBMS3
ENSSSCG00000036381
ENSG00000144642
RNA binding motif single stranded interacting protein 3
Low tissue specificity
Detected in many
RBP1
ENSSSCG00000011664
ENSG00000114115
Retinol-binding protein 1
Tissue enhanced
Detected in many
choroid plexus:
50.2
cornea:
58.8
RBPMS
ENSSSCG00000015846
ENSG00000157110
RNA binding protein, mRNA processing factor
Tissue enhanced
Detected in many
smooth muscle:
125.5
RBPMS2
ENSSSCG00000004549
ENSG00000166831
RNA binding protein, mRNA processing factor 2
Tissue enhanced
Detected in many
smooth muscle:
91.8
urinary bladder:
45.2
RCC1
ENSSSCG00000029097
ENSG00000180198
Regulator of chromosome condensation 1
Tissue enhanced
Detected in all
testis:
55.4
RCN3
ENSSSCG00000024823
ENSG00000142552
Reticulocalbin 3
Tissue enhanced
Detected in many
cartilage:
90.5
RCOR2
ENSSSCG00000013049
ENSG00000167771
REST corepressor 2
Tissue enhanced
Detected in many
cartilage:
37.3
RCVRN
ENSSSCG00000037991
ENSG00000109047
Recoverin
Group enriched
Detected in some
pineal gland:
139.1
retina:
128.1
RECK
ENSSSCG00000005338
ENSG00000122707
Reversion inducing cysteine rich protein with kazal motifs
Low tissue specificity
Detected in all
RELB
ENSSSCG00000038879
ENSG00000104856
RELB proto-oncogene, NF-kB subunit
Tissue enhanced
Detected in many
lymphoid tissue:
32.8
RELN
ENSSSCG00000015426
ENSG00000189056
Reelin
Group enriched
Detected in many
brain:
60.5
vagus nerve:
49.0
RELT
ENSSSCG00000014825
ENSG00000054967
RELT, TNF receptor
Tissue enhanced
Detected in many
lymphoid tissue:
28.3
REM1
ENSSSCG00000028529
ENSG00000088320
RRAD and GEM like GTPase 1
Low tissue specificity
Detected in many
RENBP
ENSSSCG00000012792
ENSG00000102032
N-acylglucosamine 2-epimerase
Tissue enhanced
Detected in all
kidney:
50.4
RERG
ENSSSCG00000000602
ENSG00000134533
RAS like estrogen regulated growth inhibitor
Tissue enhanced
Detected in many
adrenal gland:
59.8
cervix:
47.5
REXO5
ENSSSCG00000007855
ENSG00000005189
RNA exonuclease 5
Tissue enriched
Detected in all
testis:
117.1
RFLNA
ENSSSCG00000035760
ENSG00000178882
Refilin A
Tissue enhanced
Detected in many
ovary:
45.6
stomach:
91.4
RGCC
ENSSSCG00000009434
ENSG00000102760
Regulator of cell cycle RGCC
Low tissue specificity
Detected in all
RGL1
ENSSSCG00000015563
ENSG00000143344
Ral guanine nucleotide dissociation stimulator like 1
Low tissue specificity
Detected in all
RGMB
ENSSSCG00000014176
ENSG00000174136
Repulsive guidance molecule BMP co-receptor b
Tissue enhanced
Detected in many
lens:
55.7
RGS1
ENSSSCG00000032416
ENSG00000090104
Regulator of G protein signaling 1
Tissue enhanced
Detected in many
lymphoid tissue:
32.2
RGS13
ENSSSCG00000040300
ENSG00000127074
Regulator of G protein signaling 13
Tissue enhanced
Detected in all
lymphoid tissue:
41.7
RGS16
ENSSSCG00000015550
ENSG00000143333
Regulator of G protein signaling 16
Tissue enhanced
Detected in many
brain:
52.3
liver:
29.1
RGS19
ENSSSCG00000034841
ENSG00000171700
Regulator of G protein signaling 19
Tissue enhanced
Detected in many
lymphoid tissue:
52.2
RGS2
ENSSSCG00000037241
ENSG00000116741
Regulator of G-protein signaling 2
Tissue enhanced
Detected in all
ductus deferens:
67.9
RGS4
ENSSSCG00000006335
ENSG00000117152
Regulator of G-protein signaling 4
Group enriched
Detected in many
brain:
76.6
male glands:
55.6
RGS5
ENSSSCG00000037821
ENSG00000143248
Regulator of G-protein signaling 5
Tissue enhanced
Detected in many
cartilage:
142.1
RGS6
ENSSSCG00000033093
ENSG00000182732
Regulator of G protein signaling 6
Tissue enhanced
Detected in many
brain:
18.1
heart:
15.1
male glands:
31.5
RHBDF1
ENSSSCG00000007968
ENSG00000007384
Rhomboid 5 homolog 1
Low tissue specificity
Detected in many
RHCG
ENSSSCG00000001841
ENSG00000140519
Ammonium transporter Rh type C
Tissue enhanced
Detected in many
kidney:
19.8
mouth:
44.9
ovary:
27.8
RHNO1
ENSSSCG00000000738
ENSG00000171792
RAD9-HUS1-RAD1 interacting nuclear orphan 1
Low tissue specificity
Detected in all
RHOC
ENSSSCG00000006777
ENSG00000155366
Ras homolog family member C
Low tissue specificity
Detected in all
RHOH
ENSSSCG00000008794
ENSG00000168421
Rho-related GTP-binding protein RhoH
Tissue enriched
Detected in many
lymphoid tissue:
70.4
RHOJ
ENSSSCG00000022804
ENSG00000126785
Rho-related GTP-binding protein RhoJ
Low tissue specificity
Detected in many
RHOQ
ENSSSCG00000031261
ENSG00000119729
Ras homolog family member Q
Low tissue specificity
Detected in all
RILPL1
ENSSSCG00000009773
ENSG00000188026
Rab interacting lysosomal protein like 1
Tissue enhanced
Detected in all
heart:
50.6
RIMS1
ENSSSCG00000004280
ENSG00000079841
Regulating synaptic membrane exocytosis 1
Tissue enhanced
Detected in many
brain:
171.7
lens:
92.5
RIN3
ENSSSCG00000002451
ENSG00000100599
Ras and Rab interactor 3
Low tissue specificity
Detected in many
RIPOR1
ENSSSCG00000002774
ENSG00000039523
RHO family interacting cell polarization regulator 1
Tissue enhanced
Detected in all
lymphoid tissue:
76.6
RMI1
ENSSSCG00000039950
ENSG00000178966
RecQ mediated genome instability 1
Low tissue specificity
Detected in all
RMI2
ENSSSCG00000022149
ENSG00000175643
RecQ mediated genome instability 2
Tissue enhanced
Detected in many
large intestine:
14.3
lymphoid tissue:
19.7
RNASEH2B
ENSSSCG00000024385
ENSG00000136104
Ribonuclease H2 subunit B
Tissue enriched
Detected in all
lymphoid tissue:
109.6
RNF144B
ENSSSCG00000001076
ENSG00000137393
Ring finger protein 144B
Low tissue specificity
Detected in all
RNF150
ENSSSCG00000009053
ENSG00000170153
Ring finger protein 150
Tissue enhanced
Detected in many
large intestine:
42.4
RNF157
ENSSSCG00000017186
ENSG00000141576
Ring finger protein 157
Tissue enhanced
Detected in all
brain:
38.2
stomach:
40.8
RNF39
ENSSSCG00000025208
ENSG00000204618
RING finger protein 39
Tissue enhanced
Detected in many
cornea:
42.2
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