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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PTAFR
ENSSSCG00000031788
ENSG00000169403
Platelet activating factor receptor
Tissue enhanced
Detected in many
synovial tissue:
31.3
PTCRA
ENSSSCG00000001650
ENSG00000171611
Pre T-cell antigen receptor alpha isoform 1 precursor
Tissue enriched
Detected in some
lymphoid tissue:
52.8
PTGDS
ENSSSCG00000040080
Prostaglandin-H2 D-isomerase precursor
Tissue enhanced
Detected in many
brain:
33.6
cornea:
21.9
ductus deferens:
33.4
PTGES
ENSSSCG00000005688
ENSG00000148344
Prostaglandin E synthase
Tissue enriched
Detected in many
ovary:
139.1
PTGFRN
ENSSSCG00000006735
ENSG00000134247
Prostaglandin F2 receptor inhibitor
Low tissue specificity
Detected in all
PTGS1
ENSSSCG00000005533
ENSG00000095303
Prostaglandin-endoperoxide synthase 1
Tissue enhanced
Detected in many
cartilage:
42.8
gallbladder:
36.3
PTPN13
ENSSSCG00000026655
ENSG00000163629
Protein tyrosine phosphatase, non-receptor type 13
Low tissue specificity
Detected in all
PTPN21
ENSSSCG00000002425
ENSG00000070778
Protein tyrosine phosphatase, non-receptor type 21
Low tissue specificity
Detected in all
PTPN3
ENSSSCG00000005449
ENSG00000070159
Protein tyrosine phosphatase, non-receptor type 3
Low tissue specificity
Detected in all
PTPN7
ENSSSCG00000037669
ENSG00000143851
Protein tyrosine phosphatase, non-receptor type 7
Tissue enhanced
Detected in many
lymphoid tissue:
35.0
stomach:
18.3
PTPRD
ENSSSCG00000005194
ENSG00000153707
Protein tyrosine phosphatase, receptor type D
Tissue enhanced
Detected in many
brain:
50.8
cartilage:
34.8
kidney:
38.0
PTPRE
ENSSSCG00000010755
ENSG00000132334
Protein tyrosine phosphatase, receptor type E
Low tissue specificity
Detected in many
PTPRJ
ENSSSCG00000023709
ENSG00000149177
Protein tyrosine phosphatase, receptor type J
Low tissue specificity
Detected in all
PTPRM
ENSSSCG00000028805
ENSG00000173482
Protein tyrosine phosphatase, receptor type M
Low tissue specificity
Detected in all
PTPRN2
ENSSSCG00000026661
ENSG00000155093
Protein tyrosine phosphatase, receptor type N2
Tissue enhanced
Detected in many
brain:
27.0
pituitary gland:
21.7
stomach:
50.4
PTPRQ
ENSSSCG00000031716
ENSG00000139304
Protein tyrosine phosphatase, receptor type Q
Tissue enhanced
Detected in some
choroid plexus:
37.4
kidney:
21.3
mesothelial tissue:
74.0
PTPRR
ENSSSCG00000025969
ENSG00000153233
Protein tyrosine phosphatase, receptor type R
Tissue enhanced
Detected in many
retina:
40.8
PWWP2B
ENSSSCG00000023681
ENSG00000171813
PWWP domain containing 2B
Tissue enhanced
Detected in many
stomach:
35.8
PXDC1
ENSSSCG00000025582
ENSG00000168994
PX domain containing 1
Low tissue specificity
Detected in all
PXMP4
ENSSSCG00000034625
ENSG00000101417
Peroxisomal membrane protein 4
Low tissue specificity
Detected in all
PXYLP1
ENSSSCG00000011670
ENSG00000155893
2-phosphoxylose phosphatase 1
Tissue enriched
Detected in all
cartilage:
103.9
PYGO1
ENSSSCG00000004607
ENSG00000171016
Pygopus family PHD finger 1
Tissue enhanced
Detected in all
skeletal muscle:
55.6
PYROXD2
ENSSSCG00000010533
ENSG00000119943
Pyridine nucleotide-disulphide oxidoreductase domain 2
Tissue enhanced
Detected in many
kidney:
41.0
QSOX1
ENSSSCG00000015535
ENSG00000116260
Quiescin sulfhydryl oxidase 1
Tissue enhanced
Detected in all
liver:
66.8
male glands:
91.5
stomach:
77.5
RAB11FIP5
ENSSSCG00000022162
ENSG00000135631
RAB11 family interacting protein 5
Tissue enhanced
Detected in all
kidney:
42.9
testis:
41.1
RAB13
ENSSSCG00000006564
ENSG00000143545
RAB13, member RAS oncogene family
Low tissue specificity
Detected in all
RAB19
ENSSSCG00000038693
ENSG00000146955
RAB19, member RAS oncogene family
Tissue enhanced
Detected in all
lymphoid tissue:
40.5
RAB20
ENSSSCG00000022719
ENSG00000139832
RAB20, member RAS oncogene family
Tissue enhanced
Detected in many
heart:
26.5
RAB24
ENSSSCG00000014043
ENSG00000169228
Ras-related protein Rab-24
Low tissue specificity
Detected in all
RAB27B
ENSSSCG00000035243
ENSG00000041353
RAB27B, member RAS oncogene family
Tissue enhanced
Detected in many
male glands:
114.3
salivary gland:
34.9
RAB31
ENSSSCG00000037264
ENSG00000168461
RAB31, member RAS oncogene family
Low tissue specificity
Detected in many
RAB39B
ENSSSCG00000024233
ENSG00000155961
RAB39B, member RAS oncogene family
Tissue enhanced
Detected in some
brain:
13.0
lymphoid tissue:
10.7
pituitary gland:
7.7
retina:
7.5
RAB3IL1
ENSSSCG00000013074
ENSG00000167994
RAB3A interacting protein like 1
Tissue enhanced
Detected in many
testis:
83.0
RAD54L
ENSSSCG00000003905
ENSG00000085999
DNA repair and recombination protein RAD54-like
Tissue enhanced
Detected in all
lymphoid tissue:
32.3
RAG1
ENSSSCG00000026145
ENSG00000166349
V(D)J recombination-activating protein 1
Tissue enriched
Detected in single
lymphoid tissue:
164.0
RAG2
ENSSSCG00000034285
ENSG00000175097
V(D)J recombination-activating protein 2
Tissue enriched
Detected in many
lymphoid tissue:
40.3
RAI14
ENSSSCG00000016824
ENSG00000039560
Ankycorbin
Low tissue specificity
Detected in all
RAMP1
ENSSSCG00000016331
ENSG00000132329
Receptor activity-modifying protein 1
Tissue enhanced
Detected in many
heart:
145.3
skeletal muscle:
82.5
RAMP2
ENSSSCG00000017389
ENSG00000131477
Receptor activity-modifying protein 2 precursor
Low tissue specificity
Detected in many
RAP1GAP2
ENSSSCG00000034858
ENSG00000132359
RAP1 GTPase activating protein 2
Tissue enhanced
Detected in many
brain:
34.0
RAPGEF3
ENSSSCG00000023526
ENSG00000079337
Rap guanine nucleotide exchange factor 3
Low tissue specificity
Detected in many
RAPGEF5
ENSSSCG00000015383
ENSG00000136237
Rap guanine nucleotide exchange factor 5
Tissue enhanced
Detected in all
brain:
67.0
RARA
ENSSSCG00000017475
ENSG00000131759
Retinoic acid receptor alpha
Low tissue specificity
Detected in all
RARRES2
ENSSSCG00000035419
ENSG00000106538
Retinoic acid receptor responder protein 2 precursor
Tissue enhanced
Detected in all
kidney:
123.4
liver:
125.8
RASA3
ENSSSCG00000009567
ENSG00000185989
RAS p21 protein activator 3
Low tissue specificity
Detected in all
RASAL1
ENSSSCG00000009874
ENSG00000111344
RAS protein activator like 1
Tissue enhanced
Detected in many
adrenal gland:
30.1
salivary gland:
46.4
RASGRF2
ENSSSCG00000014127
ENSG00000113319
Ras protein specific guanine nucleotide releasing factor 2
Tissue enhanced
Detected in many
brain:
46.6
RASGRP3
ENSSSCG00000008509
ENSG00000152689
RAS guanyl releasing protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
48.3
RASGRP4
ENSSSCG00000002960
ENSG00000171777
RAS guanyl releasing protein 4
Tissue enhanced
Detected in many
lymphoid tissue:
25.9
RASL12
ENSSSCG00000038071
ENSG00000103710
RAS like family 12
Tissue enhanced
Detected in many
cervix:
37.1
smooth muscle:
38.1
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