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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PPP1R17
ENSSSCG00000033535
ENSG00000106341
Protein phosphatase 1 regulatory subunit 17
Tissue enhanced
Detected in many
adrenal gland:
43.6
brain:
71.3
pineal gland:
69.3
salivary gland:
30.4
PPP1R1A
ENSSSCG00000000298
ENSG00000135447
Protein phosphatase 1 regulatory inhibitor subunit 1A
Tissue enriched
Detected in many
skeletal muscle:
231.9
PPP1R1B
ENSSSCG00000017498
ENSG00000131771
Protein phosphatase 1 regulatory inhibitor subunit 1B
Tissue enhanced
Detected in many
brain:
198.3
choroid plexus:
83.9
male glands:
76.8
PPP1R26
ENSSSCG00000005761
ENSG00000196422
Protein phosphatase 1 regulatory subunit 26
Low tissue specificity
Detected in all
PPP1R3C
ENSSSCG00000010464
ENSG00000119938
Protein phosphatase 1 regulatory subunit 3C
Tissue enhanced
Detected in many
cartilage:
76.4
cornea:
52.4
heart:
76.5
PPP2R3A
ENSSSCG00000033185
ENSG00000073711
Protein phosphatase 2 regulatory subunit B''alpha
Low tissue specificity
Detected in all
PQLC3
ENSSSCG00000008631
ENSG00000162976
PQ loop repeat containing 3
Low tissue specificity
Detected in all
PRAM1
ENSSSCG00000024810
ENSG00000133246
PML-RARA regulated adaptor molecule 1
Tissue enhanced
Detected in all
epididymis:
60.0
lymphoid tissue:
72.8
PRCP
ENSSSCG00000014899
ENSG00000137509
Prolylcarboxypeptidase
Low tissue specificity
Detected in all
PRDM1
ENSSSCG00000004369
ENSG00000057657
PR/SET domain 1
Low tissue specificity
Detected in many
PRDM11
ENSSSCG00000013276
ENSG00000019485
PR/SET domain 11
Low tissue specificity
Detected in all
PRDM16
ENSSSCG00000021490
ENSG00000142611
PR/SET domain 16
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
PRDM8
ENSSSCG00000036555
ENSG00000152784
PR/SET domain 8
Low tissue specificity
Detected in many
PRELP
ENSSSCG00000015271
ENSG00000188783
Proline and arginine rich end leucine rich repeat protein
Tissue enriched
Detected in many
cartilage:
236.7
PREX1
ENSSSCG00000031118
ENSG00000124126
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1
Tissue enhanced
Detected in all
cartilage:
38.9
lymphoid tissue:
37.3
PREX2
ENSSSCG00000006199
ENSG00000046889
Phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2
Low tissue specificity
Detected in many
PRKACB
ENSSSCG00000040920
ENSG00000142875
Protein kinase cAMP-activated catalytic subunit beta
Tissue enhanced
Detected in many
brain:
48.5
pineal gland:
34.0
PRKAG2
ENSSSCG00000016432
ENSG00000106617
Protein kinase AMP-activated non-catalytic subunit gamma 2
Low tissue specificity
Detected in all
PRKAR2B
ENSSSCG00000037706
ENSG00000005249
Protein kinase cAMP-dependent type II regulatory subunit beta
Tissue enhanced
Detected in many
adipose tissue:
55.9
PRKCD
ENSSSCG00000023503
ENSG00000163932
Protein kinase C delta
Tissue enhanced
Detected in all
stomach:
54.1
PRKD1
ENSSSCG00000001975
ENSG00000184304
Protein kinase D1
Low tissue specificity
Detected in all
PRKG1
ENSSSCG00000010429
ENSG00000185532
CGMP-dependent protein kinase 1
Tissue enhanced
Detected in all
smooth muscle:
48.6
PRKN
ENSSSCG00000004032
ENSG00000185345
E3 ubiquitin-protein ligase parkin
Low tissue specificity
Detected in all
PRL
ENSSSCG00000039721
ENSG00000172179
Prolactin precursor
Tissue enriched
Detected in some
pituitary gland:
654.6
PROM2
ENSSSCG00000008118
ENSG00000155066
Prominin 2
Tissue enhanced
Detected in many
cornea:
71.6
stomach:
54.5
PROS1
ENSSSCG00000025463
ENSG00000184500
Protein S
Tissue enhanced
Detected in all
choroid plexus:
61.8
liver:
44.4
PROX1
ENSSSCG00000015584
ENSG00000117707
Prospero homeobox protein 1
Group enriched
Detected in many
lens:
191.6
liver:
61.8
PRPS2
ENSSSCG00000012116
ENSG00000101911
Ribose-phosphate pyrophosphokinase 2
Tissue enriched
Detected in all
male glands:
139.6
PRR11
ENSSSCG00000024145
ENSG00000068489
Proline rich 11
Tissue enhanced
Detected in all
lymphoid tissue:
30.7
PRR15L
ENSSSCG00000024743
ENSG00000167183
Proline rich 15 like
Tissue enhanced
Detected in many
large intestine:
88.9
male glands:
109.6
PRR16
ENSSSCG00000039760
ENSG00000184838
Proline rich 16
Tissue enhanced
Detected in many
adrenal gland:
54.5
pineal gland:
30.3
PRR5
ENSSSCG00000021748
ENSG00000186654
Proline-rich protein 5
Tissue enriched
Detected in many
lens:
105.4
PRR5L
ENSSSCG00000013292
ENSG00000135362
Proline rich 5 like
Tissue enhanced
Detected in many
adipose tissue:
32.8
brain:
35.0
PRRG2
ENSSSCG00000003161
ENSG00000126460
Proline rich and Gla domain 2
Tissue enhanced
Detected in many
male glands:
39.6
PRRT1
ENSSSCG00000024403
ENSG00000204314
Proline-rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
47.7
thyroid gland:
44.6
PRRT1B
ENSSSCG00000031465
ENSG00000283526
Proline rich transmembrane protein 1B
Tissue enhanced
Detected in all
kidney:
28.2
PRRX1
ENSSSCG00000031503
ENSG00000116132
Paired related homeobox 1
Tissue enhanced
Detected in many
cervix:
63.8
dura mater:
70.7
PRRX2
ENSSSCG00000005680
ENSG00000167157
Paired related homeobox 2
Tissue enhanced
Detected in many
mesothelial tissue:
34.2
PRSS16
ENSSSCG00000025410
ENSG00000112812
Serine protease 16
Tissue enriched
Detected in all
lymphoid tissue:
113.9
PRSS21
ENSSSCG00000022744
ENSG00000007038
Serine protease 21
Tissue enhanced
Detected in some
brain:
10.2
lymphoid tissue:
6.4
testis:
27.5
PRSS27
ENSSSCG00000008062
ENSG00000172382
Serine protease 27
Tissue enriched
Detected in some
mouth:
61.5
PRSS33
ENSSSCG00000030518
ENSG00000103355
Serine protease 33
Tissue enhanced
Detected in some
male glands:
20.5
salivary gland:
10.3
upper respiratory system:
20.2
PRTN3
ENSSSCG00000013417
ENSG00000196415
Proteinase 3
Tissue enriched
Detected in some
bone marrow:
129.5
PSAP
ENSSSCG00000010281
ENSG00000197746
Saposin-B-Val precursor
Tissue enhanced
Detected in all
choroid plexus:
224.0
PSAT1
ENSSSCG00000005287
ENSG00000135069
Phosphoserine aminotransferase 1
Tissue enhanced
Detected in many
brain:
65.4
PSD3
ENSSSCG00000007034
ENSG00000156011
Pleckstrin and Sec7 domain containing 3
Tissue enhanced
Detected in all
brain:
44.7
PSMA6
ENSSSCG00000001951
ENSG00000100902
Proteasome subunit alpha type-6
Low tissue specificity
Detected in all
PSMB11
ENSSSCG00000002038
ENSG00000222028
Proteasome subunit beta 11
Tissue enriched
Detected in single
lymphoid tissue:
12.8
PSMC3IP
ENSSSCG00000017396
ENSG00000131470
PSMC3 interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
14.7
testis:
19.3
PSTPIP2
ENSSSCG00000004497
ENSG00000152229
Proline-serine-threonine phosphatase interacting protein 2
Group enriched
Detected in many
lymphoid tissue:
58.5
skeletal muscle:
57.8
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