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Chromosome
1
2
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ARHGEF17
ENSSSCG00000014822
ENSG00000110237
Rho guanine nucleotide exchange factor 17
Low tissue specificity
Detected in all
ARHGEF25
ENSSSCG00000000435
ENSG00000240771
Rho guanine nucleotide exchange factor 25
Tissue enhanced
Detected in all
cervix:
47.4
ARHGEF26
ENSSSCG00000024205
ENSG00000114790
Rho guanine nucleotide exchange factor 26
Tissue enhanced
Detected in all
smooth muscle:
49.9
ARHGEF28
ENSSSCG00000028317
ENSG00000214944
Rho guanine nucleotide exchange factor 28
Tissue enhanced
Detected in many
salivary gland:
46.9
ARHGEF39
ENSSSCG00000005314
ENSG00000137135
Rho guanine nucleotide exchange factor 39
Tissue enhanced
Detected in many
lymphoid tissue:
33.4
testis:
37.3
ARHGEF40
ENSSSCG00000023857
ENSG00000165801
Rho guanine nucleotide exchange factor 40
Low tissue specificity
Detected in all
ARID5A
ENSSSCG00000008123
ENSG00000196843
AT-rich interaction domain 5A
Low tissue specificity
Detected in many
ARL5A
ENSSSCG00000031541
ENSG00000162980
ADP ribosylation factor like GTPase 5A
Low tissue specificity
Detected in all
ARL9
ENSSSCG00000008899
ENSG00000196503
ADP ribosylation factor like GTPase 9
Tissue enhanced
Detected in all
testis:
53.7
ARPC1B
ENSSSCG00000007625
ENSG00000130429
Actin-related protein 2/3 complex subunit 1B
Low tissue specificity
Detected in many
ARPP21
ENSSSCG00000011238
ENSG00000172995
CAMP regulated phosphoprotein 21
Group enriched
Detected in some
brain:
43.2
lymphoid tissue:
74.2
skeletal muscle:
35.5
ARRDC5
ENSSSCG00000037183
ENSG00000205784
Arrestin domain containing 5
Tissue enriched
Detected in all
testis:
52.4
ARSB
ENSSSCG00000038535
ENSG00000113273
Arylsulfatase B
Tissue enhanced
Detected in many
brain:
56.3
kidney:
31.9
ARSG
ENSSSCG00000017261
ENSG00000141337
Arylsulfatase G
Group enriched
Detected in all
choroid plexus:
21.9
liver:
71.3
lymphoid tissue:
26.5
ART4
ENSSSCG00000000607
ENSG00000111339
Ecto-ADP-ribosyltransferase 4 isoform 1
Tissue enhanced
Detected in many
lymphoid tissue:
28.9
ARVCF
ENSSSCG00000010133
ENSG00000099889
ARVCF, delta catenin family member
Tissue enriched
Detected in all
lens:
141.1
ASB13
ENSSSCG00000011145
ENSG00000196372
Ankyrin repeat and SOCS box containing 13
Tissue enhanced
Detected in all
kidney:
56.4
ASB2
ENSSSCG00000002467
ENSG00000100628
Ankyrin repeat and SOCS box containing 2
Group enriched
Detected in many
heart:
61.9
skeletal muscle:
119.2
ASF1B
ENSSSCG00000013772
ENSG00000105011
Histone chaperone ASF1B
Tissue enhanced
Detected in many
lymphoid tissue:
26.6
testis:
22.3
upper respiratory system:
26.7
ASIC3
ENSSSCG00000027024
ENSG00000213199
Acid sensing ion channel subunit 3
Tissue enhanced
Detected in many
lymphoid tissue:
22.2
ASNS
ENSSSCG00000015340
ENSG00000070669
Asparagine synthetase
Low tissue specificity
Detected in all
ASPA
ENSSSCG00000017861
ENSG00000108381
Aspartoacylase
Tissue enhanced
Detected in many
brain:
56.0
kidney:
19.8
vagus nerve:
32.5
ASPM
ENSSSCG00000010896
ENSG00000066279
Abnormal spindle microtubule assembly
Tissue enhanced
Detected in many
lymphoid tissue:
29.3
ASS1
ENSSSCG00000005701
ENSG00000130707
Argininosuccinate synthase 1
Group enriched
Detected in many
kidney:
136.1
liver:
198.2
ASTN1
ENSSSCG00000015513
ENSG00000152092
Astrotactin 1
Tissue enhanced
Detected in many
brain:
33.8
pineal gland:
12.0
pituitary gland:
15.2
ATAD2
ENSSSCG00000005983
ENSG00000156802
ATPase family, AAA domain containing 2
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
testis:
37.3
ATAD5
ENSSSCG00000035954
ENSG00000176208
ATPase family, AAA domain containing 5
Tissue enhanced
Detected in many
lymphoid tissue:
27.7
ATG16L2
ENSSSCG00000014819
ENSG00000168010
Autophagy related 16 like 2
Tissue enhanced
Detected in all
cartilage:
41.2
ATOH8
ENSSSCG00000008230
ENSG00000168874
Atonal bHLH transcription factor 8
Tissue enhanced
Detected in many
thyroid gland:
38.9
ATP10B
ENSSSCG00000021527
ENSG00000118322
ATPase phospholipid transporting 10B (putative)
Tissue enhanced
Detected in many
large intestine:
50.3
small intestine:
25.6
stomach:
21.1
ATP1B2
ENSSSCG00000017951
ENSG00000129244
ATPase Na+/K+ transporting subunit beta 2
Group enriched
Detected in many
adrenal gland:
44.0
brain:
150.3
pineal gland:
114.3
retina:
78.2
ATP2A1
ENSSSCG00000007805
ENSG00000196296
Sarcoplasmic/endoplasmic reticulum calcium ATPase 1
Tissue enriched
Detected in some
skeletal muscle:
375.6
ATP6V1C2
ENSSSCG00000008634
ENSG00000143882
ATPase H+ transporting V1 subunit C2
Tissue enhanced
Detected in many
brain:
22.5
epididymis:
24.1
male glands:
48.7
ATP6V1E2
ENSSSCG00000008441
ENSG00000250565
ATPase H+ transporting V1 subunit E2
Tissue enriched
Detected in many
testis:
50.0
ATP9A
ENSSSCG00000007478
ENSG00000054793
Probable phospholipid-transporting ATPase IIA
Low tissue specificity
Detected in all
ATXN1
ENSSSCG00000001065
ENSG00000124788
Ataxin 1
Low tissue specificity
Detected in all
AUNIP
ENSSSCG00000003552
ENSG00000127423
Aurora kinase A and ninein interacting protein
Low tissue specificity
Detected in all
AURKB
ENSSSCG00000028924
ENSG00000178999
Aurora kinase B
Tissue enhanced
Detected in many
lymphoid tissue:
31.7
AUTS2
ENSSSCG00000007727
ENSG00000158321
Autism susceptibility gene 2 protein
Tissue enhanced
Detected in many
cartilage:
165.4
male glands:
64.3
AVPI1
ENSSSCG00000036824
ENSG00000119986
Arginine vasopressin induced 1
Tissue enhanced
Detected in all
adrenal gland:
34.4
ovary:
38.7
AXIN2
ENSSSCG00000017265
ENSG00000168646
Axin 2
Tissue enhanced
Detected in all
cartilage:
55.2
AXL
ENSSSCG00000038806
ENSG00000167601
Tyrosine-protein kinase receptor UFO precursor
Low tissue specificity
Detected in all
B4GALNT1
ENSSSCG00000000433
ENSG00000135454
Beta-1,4-N-acetyl-galactosaminyltransferase 1
Tissue enhanced
Detected in many
ovary:
43.6
thyroid gland:
23.9
B4GALNT3
ENSSSCG00000033412
ENSG00000139044
Beta-1,4-N-acetyl-galactosaminyltransferase 3
Tissue enhanced
Detected in many
cartilage:
48.3
male glands:
38.6
vagus nerve:
27.0
B4GALT6
ENSSSCG00000025005
ENSG00000118276
Beta-1,4-galactosyltransferase 6
Tissue enhanced
Detected in many
brain:
26.8
cartilage:
11.4
ovary:
13.8
pituitary gland:
12.2
BACH2
ENSSSCG00000004332
ENSG00000112182
BTB domain and CNC homolog 2
Tissue enhanced
Detected in many
lymphoid tissue:
26.2
BAG2
ENSSSCG00000033526
ENSG00000112208
BCL2 associated athanogene 2
Tissue enhanced
Detected in all
smooth muscle:
67.5
BAHCC1
ENSSSCG00000023045
ENSG00000266074
BAH domain and coiled-coil containing 1
Low tissue specificity
Detected in many
BAIAP2L2
ENSSSCG00000000111
ENSG00000128298
BAI1 associated protein 2 like 2
Tissue enhanced
Detected in many
epididymis:
25.4
kidney:
40.6
large intestine:
45.5
small intestine:
45.7
BARD1
ENSSSCG00000016170
ENSG00000138376
BRCA1 associated RING domain 1
Tissue enhanced
Detected in all
lymphoid tissue:
21.2
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