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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PLCD3
ENSSSCG00000017338
ENSG00000161714
Phospholipase C delta 3
Low tissue specificity
Detected in all
PLCE1
ENSSSCG00000010483
ENSG00000138193
Phospholipase C epsilon 1
Tissue enhanced
Detected in many
cartilage:
33.9
stomach:
42.4
PLCG2
ENSSSCG00000002688
ENSG00000197943
Phospholipase C gamma 2
Tissue enhanced
Detected in many
cartilage:
44.5
lymphoid tissue:
44.7
PLCL1
ENSSSCG00000016083
ENSG00000115896
Phospholipase C like 1 (inactive)
Tissue enhanced
Detected in many
brain:
48.4
kidney:
32.9
pineal gland:
47.2
PLCXD3
ENSSSCG00000033993
ENSG00000182836
Phosphatidylinositol specific phospholipase C X domain containing 3
Tissue enhanced
Detected in many
brain:
40.6
pineal gland:
18.1
PLD1
ENSSSCG00000011750
ENSG00000075651
Phospholipase D1
Low tissue specificity
Detected in many
PLD4
ENSSSCG00000002554
ENSG00000166428
Phospholipase D family member 4
Tissue enhanced
Detected in many
lymphoid tissue:
30.6
synovial tissue:
41.7
PLEK
ENSSSCG00000008348
ENSG00000115956
Pleckstrin
Tissue enhanced
Detected in many
lung:
13.0
lymphoid tissue:
19.5
PLEKHA4
ENSSSCG00000003137
ENSG00000105559
Pleckstrin homology domain containing A4
Tissue enriched
Detected in many
vagus nerve:
103.3
PLEKHA5
ENSSSCG00000000588
ENSG00000052126
Pleckstrin homology domain containing A5
Low tissue specificity
Detected in all
PLEKHF2
ENSSSCG00000039549
ENSG00000175895
Pleckstrin homology and FYVE domain containing 2
Tissue enhanced
Detected in all
retina:
33.4
PLEKHG1
ENSSSCG00000032778
ENSG00000120278
Pleckstrin homology and RhoGEF domain containing G1
Tissue enhanced
Detected in all
epididymis:
44.9
PLEKHG3
ENSSSCG00000002276
ENSG00000126822
Pleckstrin homology and RhoGEF domain containing G3
Low tissue specificity
Detected in all
PLEKHG6
ENSSSCG00000000709
ENSG00000008323
Pleckstrin homology and RhoGEF domain containing G6
Tissue enhanced
Detected in many
large intestine:
18.6
mouth:
23.8
small intestine:
19.9
PLEKHH2
ENSSSCG00000008456
ENSG00000152527
Pleckstrin homology, MyTH4 and FERM domain containing H2
Low tissue specificity
Detected in all
PLEKHH3
ENSSSCG00000017391
ENSG00000068137
Pleckstrin homology, MyTH4 and FERM domain containing H3
Low tissue specificity
Detected in all
PLK1
ENSSSCG00000026748
ENSG00000166851
Polo like kinase 1
Tissue enhanced
Detected in many
stomach:
42.9
testis:
73.2
PLK2
ENSSSCG00000016925
ENSG00000145632
Polo like kinase 2
Tissue enhanced
Detected in many
bone marrow:
52.6
PLOD3
ENSSSCG00000028879
ENSG00000106397
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
Low tissue specificity
Detected in all
PLPP1
ENSSSCG00000016912
ENSG00000067113
Phospholipid phosphatase 1
Low tissue specificity
Detected in all
PLPP7
ENSSSCG00000005713
ENSG00000160539
Phospholipid phosphatase 7 (inactive)
Tissue enhanced
Detected in many
skeletal muscle:
58.0
PLVAP
ENSSSCG00000037025
ENSG00000130300
Plasmalemma vesicle associated protein
Tissue enhanced
Detected in all
lymphoid tissue:
112.6
PLXDC2
ENSSSCG00000032444
ENSG00000120594
Plexin domain containing 2
Low tissue specificity
Detected in all
PLXNA4
ENSSSCG00000021562
ENSG00000221866
Plexin A4
Tissue enhanced
Detected in many
brain:
30.1
penis:
32.8
PLXNB2
ENSSSCG00000035733
ENSG00000196576
Plexin B2
Low tissue specificity
Detected in all
PLXNC1
ENSSSCG00000000907
ENSG00000136040
Plexin C1
Tissue enhanced
Detected in many
cervix:
35.6
lymphoid tissue:
45.6
PLXND1
ENSSSCG00000011592
ENSG00000004399
Plexin D1
Low tissue specificity
Detected in many
PMEL
ENSSSCG00000000371
ENSG00000185664
Premelanosome protein
Tissue enhanced
Detected in many
cornea:
10.6
lymphoid tissue:
13.9
PMEPA1
ENSSSCG00000034259
ENSG00000124225
Protein TMEPAI
Tissue enhanced
Detected in many
cartilage:
70.3
PNKD
ENSSSCG00000029002
ENSG00000127838
Paroxysmal nonkinesigenic dyskinesia
Low tissue specificity
Detected in all
PNP
ENSSSCG00000002135
ENSG00000198805
Purine nucleoside phosphorylase
Low tissue specificity
Detected in many
POLE
ENSSSCG00000033051
ENSG00000177084
DNA polymerase epsilon, catalytic subunit
Tissue enhanced
Detected in many
lymphoid tissue:
17.5
POLE2
ENSSSCG00000005008
ENSG00000100479
DNA polymerase epsilon 2, accessory subunit
Tissue enhanced
Detected in many
lymphoid tissue:
19.8
POLN
ENSSSCG00000008684
ENSG00000130997
DNA polymerase nu
Group enriched
Detected in many
lymphoid tissue:
23.4
testis:
24.9
POLQ
ENSSSCG00000036613
ENSG00000051341
DNA polymerase theta
Tissue enhanced
Detected in many
lymphoid tissue:
13.6
testis:
9.4
POLR3H
ENSSSCG00000000063
ENSG00000100413
RNA polymerase III subunit H
Low tissue specificity
Detected in all
POU2AF1
ENSSSCG00000015016
ENSG00000110777
POU domain class 2-associating factor 1
Tissue enhanced
Detected in some
lung:
22.4
lymphoid tissue:
54.3
small intestine:
20.6
upper respiratory system:
48.9
POU2F2
ENSSSCG00000037132
ENSG00000028277
POU domain, class 2, transcription factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
56.2
stomach:
25.0
upper respiratory system:
25.1
POU2F3
ENSSSCG00000028237
ENSG00000137709
POU class 2 homeobox 3
Group enriched
Detected in some
breast:
35.7
skin:
88.7
POU6F2
ENSSSCG00000037764
ENSG00000106536
POU class 6 homeobox 2
Tissue enhanced
Detected in many
cornea:
20.3
testis:
20.1
PPARG
ENSSSCG00000011579
ENSG00000132170
Peroxisome proliferator-activated receptor gamma
Tissue enhanced
Detected in many
adipose tissue:
52.9
aorta:
32.5
bone marrow:
41.6
large intestine:
29.5
lymphoid tissue:
33.8
PPARGC1B
ENSSSCG00000014437
ENSG00000155846
PPARG coactivator 1 beta
Tissue enhanced
Detected in many
stomach:
41.6
PPAT
ENSSSCG00000008902
ENSG00000128059
Phosphoribosyl pyrophosphate amidotransferase
Low tissue specificity
Detected in all
PPCDC
ENSSSCG00000027478
ENSG00000138621
Phosphopantothenoylcysteine decarboxylase
Low tissue specificity
Detected in all
PPFIBP1
ENSSSCG00000000549
ENSG00000110841
PPFIA binding protein 1
Low tissue specificity
Detected in all
PPL
ENSSSCG00000007927
ENSG00000118898
Periplakin
Tissue enhanced
Detected in many
cornea:
48.9
lens:
49.6
mouth:
70.7
PPM1H
ENSSSCG00000036751
ENSG00000111110
Protein phosphatase, Mg2+/Mn2+ dependent 1H
Low tissue specificity
Detected in all
PPM1L
ENSSSCG00000023434
ENSG00000163590
Protein phosphatase, Mg2+/Mn2+ dependent 1L
Tissue enhanced
Detected in many
skeletal muscle:
36.8
PPP1R12B
ENSSSCG00000010925
ENSG00000077157
Protein phosphatase 1 regulatory subunit 12B
Tissue enhanced
Detected in all
smooth muscle:
91.9
PPP1R13L
ENSSSCG00000036542
ENSG00000104881
Protein phosphatase 1 regulatory subunit 13 like
Tissue enhanced
Detected in many
heart:
34.6
skin:
63.8
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