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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PDZD2
ENSSSCG00000016810
ENSG00000133401
PDZ domain containing 2
Low tissue specificity
Detected in all
PEA15
ENSSSCG00000032164
ENSG00000162734
Proliferation and apoptosis adaptor protein 15
Tissue enriched
Detected in all
lens:
683.5
PEAK1
ENSSSCG00000001869
ENSG00000173517
Pseudopodium-enriched atypical kinase 1
Low tissue specificity
Detected in all
PEAR1
ENSSSCG00000006463
ENSG00000187800
Platelet endothelial aggregation receptor 1
Low tissue specificity
Detected in all
PECAM1
ENSSSCG00000017277
ENSG00000261371
Platelet endothelial cell adhesion molecule precursor
Tissue enhanced
Detected in many
cartilage:
100.2
PERP
ENSSSCG00000038420
ENSG00000112378
P53 apoptosis effector related to PMP-22
Tissue enhanced
Detected in many
cornea:
115.4
mouth:
93.3
skin:
53.2
PFKFB2
ENSSSCG00000015660
ENSG00000123836
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
Tissue enhanced
Detected in many
mouth:
32.0
skin:
57.4
PFKFB3
ENSSSCG00000011133
ENSG00000170525
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tissue enhanced
Detected in many
cartilage:
45.0
kidney:
49.1
skeletal muscle:
57.0
PFKFB4
ENSSSCG00000011353
ENSG00000114268
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
Low tissue specificity
Detected in all
PFKM
ENSSSCG00000021129
ENSG00000152556
ATP-dependent 6-phosphofructokinase, muscle type
Tissue enhanced
Detected in many
heart:
66.0
skeletal muscle:
163.3
PGAM2
ENSSSCG00000016720
ENSG00000164708
Phosphoglycerate mutase 2
Tissue enriched
Detected in some
skeletal muscle:
191.4
PGBD5
ENSSSCG00000021027
ENSG00000177614
PiggyBac transposable element derived 5
Tissue enhanced
Detected in many
brain:
31.3
lymphoid tissue:
21.7
PGF
ENSSSCG00000002376
ENSG00000119630
Placental growth factor
Tissue enhanced
Detected in many
male glands:
50.9
PGGHG
ENSSSCG00000025023
ENSG00000142102
Protein-glucosylgalactosylhydroxylysine glucosidase
Low tissue specificity
Detected in many
PGM5
ENSSSCG00000005243
ENSG00000154330
Phosphoglucomutase 5
Tissue enhanced
Detected in many
ductus deferens:
87.8
smooth muscle:
116.8
urinary bladder:
103.9
PHACTR1
ENSSSCG00000001052
ENSG00000112137
Phosphatase and actin regulator 1
Tissue enriched
Detected in many
brain:
66.8
PHF19
ENSSSCG00000005510
ENSG00000119403
PHD finger protein 19
Tissue enhanced
Detected in all
cartilage:
53.7
PHF21B
ENSSSCG00000000020
ENSG00000056487
PHD finger protein 21B
Low tissue specificity
Detected in many
PHGDH
ENSSSCG00000006717
ENSG00000092621
D-3-phosphoglycerate dehydrogenase
Tissue enhanced
Detected in many
brain:
44.1
endometrium:
80.4
PHLDA1
ENSSSCG00000000521
ENSG00000139289
Pleckstrin homology like domain family A member 1
Tissue enhanced
Detected in all
cartilage:
197.4
salivary gland:
118.9
PHLDA2
ENSSSCG00000021597
ENSG00000181649
Pleckstrin homology-like domain family A member 2
Tissue enhanced
Detected in many
urinary bladder:
47.4
PHLDB1
ENSSSCG00000024578
ENSG00000019144
Pleckstrin homology like domain family B member 1
Tissue enhanced
Detected in all
cartilage:
87.1
PHLDB2
ENSSSCG00000022081
ENSG00000144824
Pleckstrin homology like domain family B member 2
Low tissue specificity
Detected in many
PI16
ENSSSCG00000001570
ENSG00000164530
Peptidase inhibitor 16 precursor
Group enriched
Detected in many
aorta:
78.7
mesothelial tissue:
207.1
PID1
ENSSSCG00000035058
ENSG00000153823
PTB-containing, cubilin and LRP1-interacting protein
Tissue enhanced
Detected in all
cartilage:
70.1
choroid plexus:
63.6
PIEZO1
ENSSSCG00000035230
ENSG00000103335
Piezo type mechanosensitive ion channel component 1
Low tissue specificity
Detected in many
PIF1
ENSSSCG00000004548
ENSG00000140451
PIF1 5'-to-3' DNA helicase
Tissue enhanced
Detected in many
lymphoid tissue:
12.3
PIGR
ENSSSCG00000015657
ENSG00000162896
Polymeric immunoglobulin receptor precursor
Tissue enhanced
Detected in some
large intestine:
90.9
small intestine:
256.4
stomach:
136.2
upper respiratory system:
337.1
PIGZ
ENSSSCG00000029291
ENSG00000119227
Phosphatidylinositol glycan anchor biosynthesis class Z
Tissue enhanced
Detected in all
lymphoid tissue:
17.4
PIK3AP1
ENSSSCG00000010509
ENSG00000155629
Phosphoinositide 3-kinase adapter protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
49.3
PIK3R3
ENSSSCG00000003909
ENSG00000117461
Phosphoinositide-3-kinase regulatory subunit 3
Tissue enhanced
Detected in all
brain:
52.5
PIM3
ENSSSCG00000032936
ENSG00000198355
Pim-3 proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
PIMREG
ENSSSCG00000017893
ENSG00000129195
PICALM interacting mitotic regulator
Tissue enhanced
Detected in many
adrenal gland:
13.7
male glands:
14.0
mouth:
12.8
PIRT
ENSSSCG00000037179
ENSG00000233670
Phosphoinositide interacting regulator of transient receptor potential channels
Tissue enriched
Detected in some
stomach:
38.5
PITPNC1
ENSSSCG00000017274
ENSG00000154217
Cytoplasmic phosphatidylinositol transfer protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
103.0
PITPNM3
ENSSSCG00000017892
ENSG00000091622
PITPNM family member 3
Tissue enhanced
Detected in many
adrenal gland:
28.9
male glands:
32.4
retina:
34.6
PKD1
ENSSSCG00000008041
ENSG00000008710
Polycystin-1 precursor
Tissue enhanced
Detected in all
cartilage:
58.6
PKIB
ENSSSCG00000004236
ENSG00000135549
CAMP-dependent protein kinase inhibitor beta
Tissue enhanced
Detected in many
brain:
30.0
cornea:
40.2
male glands:
32.0
stomach:
35.0
PKIG
ENSSSCG00000022998
ENSG00000168734
CAMP-dependent protein kinase inhibitor gamma
Low tissue specificity
Detected in all
PKLR
ENSSSCG00000026149
ENSG00000143627
Pyruvate kinase L/R
Tissue enriched
Detected in some
liver:
53.5
PKP1
ENSSSCG00000030694
ENSG00000081277
Plakophilin 1
Group enriched
Detected in some
cornea:
63.6
mouth:
72.7
skin:
70.8
PLA2G16
ENSSSCG00000026914
ENSG00000176485
HRAS-like suppressor 3
Tissue enhanced
Detected in all
lens:
127.2
PLA2G2D
ENSSSCG00000031106
ENSG00000117215
Group IID secretory phospholipase A2 precursor
Tissue enhanced
Detected in some
large intestine:
11.1
lymphoid tissue:
41.0
small intestine:
11.9
upper respiratory system:
14.0
PLA2G2F
ENSSSCG00000036504
ENSG00000158786
Group IIF secretory phospholipase A2
Tissue enhanced
Detected in some
large intestine:
6.4
lymphoid tissue:
8.4
retina:
8.3
skin:
27.8
PLA2G7
ENSSSCG00000001723
ENSG00000146070
Platelet-activating factor acetylhydrolase isoform 1 precursor
Tissue enhanced
Detected in all
lens:
62.1
PLAT
ENSSSCG00000007032
ENSG00000104368
Tissue-type plasminogen activator precursor
Low tissue specificity
Detected in many
PLAU
ENSSSCG00000010312
ENSG00000122861
Urokinase-type plasminogen activator precursor
Tissue enhanced
Detected in many
mesothelial tissue:
27.6
synovial tissue:
61.9
PLCB1
ENSSSCG00000007056
ENSG00000182621
Phospholipase C beta 1
Tissue enhanced
Detected in many
male glands:
57.8
PLCB2
ENSSSCG00000004779
ENSG00000137841
Phospholipase C beta 2
Tissue enhanced
Detected in many
lymphoid tissue:
58.0
PLCD1
ENSSSCG00000027550
ENSG00000187091
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1
Tissue enhanced
Detected in all
cartilage:
55.6
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