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Keyword
Chromosome
1
2
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6
7
8
9
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11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PANX1
ENSSSCG00000032360
ENSG00000110218
Pannexin 1
Tissue enhanced
Detected in many
ovary:
15.3
PAPLN
ENSSSCG00000002341
ENSG00000100767
Papilin, proteoglycan like sulfated glycoprotein
Tissue enriched
Detected in many
kidney:
72.8
PAPPA
ENSSSCG00000005498
ENSG00000182752
Pappalysin 1
Tissue enhanced
Detected in many
cartilage:
64.8
PARD3
ENSSSCG00000011103
ENSG00000148498
Par-3 family cell polarity regulator
Low tissue specificity
Detected in all
PARD3B
ENSSSCG00000016123
ENSG00000116117
Par-3 family cell polarity regulator beta
Low tissue specificity
Detected in all
PARD6G
ENSSSCG00000023376
ENSG00000178184
Par-6 family cell polarity regulator gamma
Tissue enhanced
Detected in many
cornea:
24.6
PARM1
ENSSSCG00000008966
ENSG00000169116
Prostate androgen-regulated mucin-like protein 1 precursor
Tissue enhanced
Detected in all
pineal gland:
103.9
PARP12
ENSSSCG00000016502
ENSG00000059378
Poly(ADP-ribose) polymerase family member 12
Low tissue specificity
Detected in many
PARP4
ENSSSCG00000022957
ENSG00000102699
Poly(ADP-ribose) polymerase family member 4
Low tissue specificity
Detected in all
PARPBP
ENSSSCG00000000859
ENSG00000185480
PARP1 binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
15.1
testis:
11.2
PARVA
ENSSSCG00000028827
ENSG00000197702
Parvin alpha
Tissue enhanced
Detected in all
smooth muscle:
89.0
PARVB
ENSSSCG00000000024
ENSG00000188677
Parvin beta
Tissue enhanced
Detected in many
skeletal muscle:
39.7
PARVG
ENSSSCG00000000025
ENSG00000138964
Gamma-parvin
Tissue enhanced
Detected in many
lymphoid tissue:
38.8
stomach:
21.2
PAWR
ENSSSCG00000036560
ENSG00000177425
Pro-apoptotic WT1 regulator
Low tissue specificity
Detected in many
PAX1
ENSSSCG00000007112
ENSG00000125813
Paired box 1
Group enriched
Detected in some
lymphoid tissue:
31.8
upper respiratory system:
8.4
PAX5
ENSSSCG00000036086
ENSG00000196092
Paired box 5
Tissue enhanced
Detected in some
lymphoid tissue:
69.4
upper respiratory system:
37.6
PAX9
ENSSSCG00000001942
ENSG00000198807
Paired box 9
Group enriched
Detected in some
esophagus:
41.4
male glands:
77.7
mouth:
25.3
salivary gland:
21.1
upper respiratory system:
33.8
PCBP4
ENSSSCG00000028446
ENSG00000090097
Poly(rC) binding protein 4
Tissue enhanced
Detected in many
brain:
47.4
pineal gland:
60.2
retina:
87.1
vagus nerve:
53.4
PCDH15
ENSSSCG00000010426
ENSG00000150275
Protocadherin related 15
Tissue enhanced
Detected in some
lens:
24.5
ovary:
13.8
retina:
67.0
PCDH17
ENSSSCG00000009446
ENSG00000118946
Protocadherin 17
Tissue enhanced
Detected in many
brain:
36.9
PCDH18
ENSSSCG00000032749
ENSG00000189184
Protocadherin 18
Low tissue specificity
Detected in many
PCDH19
ENSSSCG00000012479
ENSG00000165194
Protocadherin 19
Tissue enhanced
Detected in many
lens:
38.0
PCDH9
ENSSSCG00000038842
ENSG00000184226
Protocadherin 9
Group enriched
Detected in many
brain:
123.4
pineal gland:
30.8
PCDHGB1
ENSSSCG00000025141
ENSG00000254221
Protocadherin gamma subfamily B, 1
Low tissue specificity
Detected in many
PCED1B
ENSSSCG00000000811
ENSG00000179715
PC-esterase domain containing 1B
Tissue enhanced
Detected in many
endometrium:
46.4
lymphoid tissue:
51.7
PCLAF
ENSSSCG00000004554
ENSG00000166803
PCNA-associated factor
Tissue enhanced
Detected in many
lymphoid tissue:
41.0
PCNA
ENSSSCG00000030642
ENSG00000132646
Proliferating cell nuclear antigen
Tissue enhanced
Detected in all
lymphoid tissue:
46.8
PCOLCE
ENSSSCG00000027466
ENSG00000106333
Procollagen C-endopeptidase enhancer
Tissue enhanced
Detected in many
cartilage:
123.2
synovial tissue:
132.1
PCOLCE2
ENSSSCG00000011683
ENSG00000163710
Procollagen C-endopeptidase enhancer 2
Tissue enriched
Detected in many
ovary:
107.9
PCSK5
ENSSSCG00000023520
ENSG00000099139
Proprotein convertase subtilisin/kexin type 5
Tissue enhanced
Detected in many
cartilage:
36.4
mesothelial tissue:
34.3
small intestine:
38.7
PDCD1
ENSSSCG00000037319
ENSG00000188389
Programmed cell death protein 1 precursor
Tissue enhanced
Detected in some
large intestine:
11.0
lymphoid tissue:
14.8
thyroid gland:
7.5
PDE10A
ENSSSCG00000004027
ENSG00000112541
Phosphodiesterase 10A
Tissue enhanced
Detected in many
brain:
69.6
PDE2A
ENSSSCG00000029388
ENSG00000186642
Phosphodiesterase 2A
Tissue enhanced
Detected in many
brain:
54.7
PDE3A
ENSSSCG00000028662
ENSG00000172572
CGMP-inhibited 3',5'-cyclic phosphodiesterase A
Tissue enhanced
Detected in many
heart:
78.3
PDE4A
ENSSSCG00000013642
ENSG00000065989
CAMP-specific 3',5'-cyclic phosphodiesterase 4A
Tissue enhanced
Detected in many
male glands:
60.9
skeletal muscle:
47.4
PDE9A
ENSSSCG00000030016
ENSG00000160191
Phosphodiesterase 9A
Low tissue specificity
Detected in all
PDGFA
ENSSSCG00000007541
ENSG00000197461
Platelet derived growth factor subunit A
Low tissue specificity
Detected in all
PDGFB
ENSSSCG00000033327
ENSG00000100311
Platelet derived growth factor subunit B
Low tissue specificity
Detected in many
PDGFC
ENSSSCG00000024960
ENSG00000145431
Platelet derived growth factor C
Low tissue specificity
Detected in many
PDGFRA
ENSSSCG00000008841
ENSG00000134853
Platelet-derived growth factor receptor alpha precursor
Tissue enhanced
Detected in all
cartilage:
67.5
ovary:
55.7
PDGFRB
ENSSSCG00000022741
ENSG00000113721
Platelet derived growth factor receptor beta
Low tissue specificity
Detected in many
PDGFRL
ENSSSCG00000006988
ENSG00000104213
Platelet derived growth factor receptor like
Tissue enhanced
Detected in many
cornea:
98.9
PDIA6
ENSSSCG00000008633
ENSG00000143870
Protein disulfide-isomerase A6 precursor
Low tissue specificity
Detected in all
PDK3
ENSSSCG00000012181
ENSG00000067992
Pyruvate dehydrogenase kinase 3
Low tissue specificity
Detected in all
PDK4
ENSSSCG00000015334
ENSG00000004799
Pyruvate dehydrogenase kinase, isozyme 4
Tissue enhanced
Detected in many
choroid plexus:
112.5
skeletal muscle:
87.4
PDLIM3
ENSSSCG00000015796
ENSG00000154553
PDZ and LIM domain protein 3
Tissue enhanced
Detected in many
skeletal muscle:
162.1
PDLIM5
ENSSSCG00000009192
ENSG00000163110
PDZ and LIM domain 5
Tissue enhanced
Detected in all
heart:
132.1
skeletal muscle:
126.5
PDLIM7
ENSSSCG00000040507
ENSG00000196923
PDZ and LIM domain 7
Tissue enhanced
Detected in all
skeletal muscle:
228.4
smooth muscle:
135.2
PDXK
ENSSSCG00000034758
ENSG00000160209
Pyridoxal kinase
Tissue enhanced
Detected in all
brain:
25.4
PDXP
ENSSSCG00000034632
ENSG00000241360
Pyridoxal phosphatase
Tissue enhanced
Detected in many
brain:
33.1
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