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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ALPL
ENSSSCG00000032607
ENSG00000162551
Alkaline phosphatase, liver/bone/kidney
Tissue enhanced
Detected in many
dura mater:
56.0
kidney:
77.7
ALS2CL
ENSSSCG00000021997
ENSG00000178038
ALS2 C-terminal like
Low tissue specificity
Detected in many
AMOT
ENSSSCG00000012591
ENSG00000126016
Angiomotin
Tissue enhanced
Detected in all
epididymis:
59.2
male glands:
93.4
skeletal muscle:
52.8
AMOTL2
ENSSSCG00000011643
ENSG00000114019
Angiomotin like 2
Low tissue specificity
Detected in all
AMPH
ENSSSCG00000024136
ENSG00000078053
Amphiphysin
Group enriched
Detected in many
brain:
39.6
lens:
56.5
pineal gland:
19.6
pituitary gland:
21.3
retina:
32.4
AMTN
ENSSSCG00000008936
ENSG00000187689
Amelotin
Tissue enriched
Detected in some
lymphoid tissue:
14.9
ANGEL1
ENSSSCG00000002390
ENSG00000013523
Angel homolog 1
Tissue enhanced
Detected in all
testis:
42.9
ANGPT1
ENSSSCG00000006035
ENSG00000154188
Angiopoietin-1 precursor
Tissue enhanced
Detected in many
brain:
18.9
pituitary gland:
19.1
ANGPTL2
ENSSSCG00000005608
ENSG00000136859
Angiopoietin-related protein 2 precursor
Tissue enhanced
Detected in many
cartilage:
130.4
ANK2
ENSSSCG00000009125
ENSG00000145362
Ankyrin 2
Tissue enhanced
Detected in many
brain:
39.6
lens:
88.5
ANKH
ENSSSCG00000016784
ENSG00000154122
ANKH inorganic pyrophosphate transport regulator
Tissue enriched
Detected in many
cartilage:
124.6
ANKLE1
ENSSSCG00000037099
ENSG00000160117
Ankyrin repeat and LEM domain containing 1
Tissue enhanced
Detected in many
dura mater:
11.3
lymphoid tissue:
12.9
upper respiratory system:
10.5
ANKRD22
ENSSSCG00000010445
ENSG00000152766
Ankyrin repeat domain 22
Tissue enhanced
Detected in many
large intestine:
33.2
small intestine:
17.6
stomach:
15.9
ANKRD29
ENSSSCG00000003708
ENSG00000154065
Ankyrin repeat domain 29
Low tissue specificity
Detected in all
ANKRD45
ENSSSCG00000015491
ENSG00000183831
Ankyrin repeat domain 45
Tissue enhanced
Detected in many
choroid plexus:
39.3
testis:
39.8
ANKRD53
ENSSSCG00000031976
ENSG00000144031
Ankyrin repeat domain 53
Tissue enhanced
Detected in many
adipose tissue:
11.9
kidney:
26.0
testis:
24.9
ANKRD63
ENSSSCG00000035682
ENSG00000230778
Ankyrin repeat domain 63
Group enriched
Detected in some
brain:
31.8
lymphoid tissue:
9.4
ANKS1A
ENSSSCG00000001534
ENSG00000064999
Ankyrin repeat and SAM domain-containing protein 1A
Tissue enriched
Detected in all
kidney:
96.5
ANLN
ENSSSCG00000016658
ENSG00000011426
Anillin actin binding protein
Tissue enriched
Detected in many
brain:
111.4
ANO9
ENSSSCG00000024569
ENSG00000185101
Anoctamin 9
Tissue enhanced
Detected in many
large intestine:
25.9
skin:
20.5
small intestine:
32.6
stomach:
36.6
ANPEP
ENSSSCG00000001849
ENSG00000166825
Aminopeptidase N
Tissue enhanced
Detected in many
male glands:
57.2
small intestine:
208.3
ANTXR1
ENSSSCG00000008340
ENSG00000169604
Anthrax toxin receptor 1
Tissue enhanced
Detected in all
cervix:
100.2
ANXA1
ENSSSCG00000005267
ENSG00000135046
Annexin A1
Tissue enhanced
Detected in all
mouth:
174.6
AOAH
ENSSSCG00000016657
ENSG00000136250
Acyloxyacyl hydrolase
Tissue enriched
Detected in many
lymphoid tissue:
116.5
AOC1
ENSSSCG00000016442
ENSG00000002726
Amiloride-sensitive amine oxidase [copper-containing]
Group enriched
Detected in some
kidney:
147.9
large intestine:
49.3
small intestine:
58.7
APBA1
ENSSSCG00000005250
ENSG00000107282
Amyloid beta precursor protein binding family A member 1
Tissue enhanced
Detected in many
brain:
24.6
lens:
25.4
APCDD1
ENSSSCG00000039797
ENSG00000154856
APC down-regulated 1
Tissue enhanced
Detected in all
epididymis:
55.5
APCS
ENSSSCG00000037268
ENSG00000132703
Serum amyloid P-component
Tissue enriched
Detected in many
liver:
112.8
APLP2
ENSSSCG00000015244
ENSG00000084234
Amyloid beta precursor like protein 2
Low tissue specificity
Detected in all
APOA2
ENSSSCG00000006355
ENSG00000158874
Apolipoprotein A-II precursor
Tissue enriched
Detected in some
liver:
315.5
APOE
ENSSSCG00000003088
ENSG00000130203
Apolipoprotein E precursor
Tissue enriched
Detected in many
liver:
755.1
APP
ENSSSCG00000012022
ENSG00000142192
Amyloid-beta A4 protein N-APP Soluble APP-alpha Soluble APP-beta C99 Amyloid-beta protein 42 amyloid-beta protein 40 C83 P3(42) P3(40) C80 Gamma-secretase C-terminal fragment 59 Gamma-secretase C-terminal fragment 57 Gamma-secretase C-terminal fragment 50 C31
Low tissue specificity
Detected in all
AQP3
ENSSSCG00000040513
ENSG00000165272
Aquaporin-3
Tissue enhanced
Detected in many
kidney:
52.7
mouth:
41.9
upper respiratory system:
73.3
ARAP1
ENSSSCG00000014817
ENSG00000186635
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
Low tissue specificity
Detected in all
ARAP3
ENSSSCG00000014391
ENSG00000120318
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
Low tissue specificity
Detected in many
ARHGAP10
ENSSSCG00000009029
ENSG00000071205
Rho GTPase activating protein 10
Low tissue specificity
Detected in all
ARHGAP17
ENSSSCG00000031488
ENSG00000140750
Rho GTPase activating protein 17
Low tissue specificity
Detected in all
ARHGAP20
ENSSSCG00000015015
ENSG00000137727
Rho GTPase activating protein 20
Tissue enhanced
Detected in many
pineal gland:
41.4
testis:
31.7
ARHGAP21
ENSSSCG00000011074
ENSG00000107863
Rho GTPase activating protein 21
Low tissue specificity
Detected in all
ARHGAP22
ENSSSCG00000010381
ENSG00000128805
Rho GTPase activating protein 22
Tissue enhanced
Detected in many
synovial tissue:
28.6
ARHGAP23
ENSSSCG00000018058
ENSG00000275832
Rho GTPase activating protein 23
Tissue enhanced
Detected in many
brain:
47.5
ARHGAP24
ENSSSCG00000009229
ENSG00000138639
Rho GTPase activating protein 24
Tissue enhanced
Detected in all
kidney:
44.3
lens:
48.2
pineal gland:
47.9
ARHGAP26
ENSSSCG00000014399
ENSG00000145819
Rho GTPase activating protein 26
Low tissue specificity
Detected in all
ARHGAP28
ENSSSCG00000021612
ENSG00000088756
Rho GTPase activating protein 28
Low tissue specificity
Detected in many
ARHGAP32
ENSSSCG00000015238
ENSG00000134909
Rho GTPase activating protein 32
Tissue enhanced
Detected in all
brain:
44.2
ARHGAP33
ENSSSCG00000039135
ENSG00000004777
Rho GTPase activating protein 33
Group enriched
Detected in many
brain:
18.6
lymphoid tissue:
14.2
testis:
39.4
ARHGAP5
ENSSSCG00000001966
ENSG00000100852
Rho GTPase activating protein 5
Low tissue specificity
Detected in all
ARHGEF10
ENSSSCG00000023419
ENSG00000104728
Rho guanine nucleotide exchange factor 10
Tissue enhanced
Detected in all
vagus nerve:
83.9
ARHGEF12
ENSSSCG00000015129
ENSG00000196914
Rho guanine nucleotide exchange factor 12
Low tissue specificity
Detected in all
ARHGEF15
ENSSSCG00000028048
ENSG00000198844
Rho guanine nucleotide exchange factor 15
Low tissue specificity
Detected in many
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