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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADCY2
ENSSSCG00000017101
ENSG00000078295
Adenylate cyclase 2
Tissue enhanced
Detected in many
brain:
39.7
skeletal muscle:
38.1
ADCY4
ENSSSCG00000001988
ENSG00000129467
Adenylate cyclase 4
Tissue enhanced
Detected in many
lymphoid tissue:
44.9
ADCY5
ENSSSCG00000027952
ENSG00000173175
Adenylate cyclase 5
Tissue enriched
Detected in many
brain:
73.5
ADCY6
ENSSSCG00000000175
ENSG00000174233
Adenylate cyclase 6
Tissue enhanced
Detected in all
heart:
76.9
ADCY9
ENSSSCG00000007950
ENSG00000162104
Adenylate cyclase 9
Low tissue specificity
Detected in all
ADCYAP1R1
ENSSSCG00000016672
ENSG00000078549
Pituitary adenylate cyclase-activating polypeptide type I receptor precursor
Group enriched
Detected in many
brain:
32.6
choroid plexus:
19.4
heart:
36.6
male glands:
36.8
ADGRA2
ENSSSCG00000015825
ENSG00000020181
Adhesion G protein-coupled receptor A2
Low tissue specificity
Detected in all
ADGRB1
ENSSSCG00000035891
ENSG00000181790
Adhesion G protein-coupled receptor B1
Group enriched
Detected in many
adrenal gland:
29.7
brain:
32.9
ADGRD1
ENSSSCG00000009745
ENSG00000111452
Adhesion G protein-coupled receptor D1
Tissue enhanced
Detected in many
mesothelial tissue:
53.9
ADGRE1
ENSSSCG00000013556
ENSG00000174837
Adhesion G protein-coupled receptor E1
Group enriched
Detected in some
adipose tissue:
17.7
liver:
9.3
lung:
32.7
synovial tissue:
23.0
ADGRG1
ENSSSCG00000002815
ENSG00000205336
Adhesion G-protein coupled receptor G1 precursor
Low tissue specificity
Detected in all
ADGRG5
ENSSSCG00000025503
ENSG00000159618
Adhesion G protein-coupled receptor G5
Tissue enhanced
Detected in many
lymphoid tissue:
25.7
stomach:
22.1
ADGRG6
ENSSSCG00000004139
ENSG00000112414
Adhesion G protein-coupled receptor G6
Tissue enriched
Detected in many
cartilage:
97.1
ADGRL2
ENSSSCG00000003761
ENSG00000117114
Adhesion G protein-coupled receptor L2
Low tissue specificity
Detected in all
ADIRF
ENSSSCG00000037918
ENSG00000148671
Adipogenesis regulatory factor
Group enriched
Detected in many
adipose tissue:
186.4
cornea:
417.2
penis:
193.0
ADM
ENSSSCG00000013408
ENSG00000148926
ADM Adrenomedullin Proadrenomedullin N-20 terminal peptide
Tissue enhanced
Detected in many
aorta:
30.1
cartilage:
36.0
ADM5
ENSSSCG00000032629
ADM5 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
22.4
ADORA2A
ENSSSCG00000010054
ENSG00000128271
Adenosine A2a receptor
Tissue enriched
Detected in many
brain:
67.0
ADORA3
ENSSSCG00000006788
ENSG00000282608
Transmembrane and immunoglobulin domain containing 3 isoform 3
Group enriched
Detected in many
brain:
17.5
lymphoid tissue:
32.3
ADRA1A
ENSSSCG00000009661
ENSG00000120907
Alpha-1A adrenergic receptor
Tissue enhanced
Detected in many
liver:
72.1
ADRA1B
ENSSSCG00000017041
ENSG00000170214
Adrenoceptor alpha 1B
Tissue enhanced
Detected in many
lymphoid tissue:
12.2
penis:
20.7
pineal gland:
21.9
ADRA2A
ENSSSCG00000010629
ENSG00000150594
Alpha-2A adrenergic receptor
Tissue enhanced
Detected in many
gallbladder:
51.0
stomach:
34.8
ADRA2C
ENSSSCG00000008703
ENSG00000184160
Adrenoceptor alpha 2C
Tissue enhanced
Detected in many
brain:
28.9
penis:
24.3
ADRB1
ENSSSCG00000010647
ENSG00000043591
Beta-1 adrenergic receptor
Tissue enhanced
Detected in many
cartilage:
21.2
heart:
30.9
lymphoid tissue:
27.4
male glands:
54.3
ADRB2
ENSSSCG00000038598
ENSG00000169252
Beta-2 adrenergic receptor
Low tissue specificity
Detected in many
ADRB3
ENSSSCG00000015821
ENSG00000188778
Beta-3 adrenergic receptor
Group enriched
Detected in some
lymphoid tissue:
28.2
smooth muscle:
7.3
AEBP1
ENSSSCG00000016754
ENSG00000106624
AE binding protein 1
Tissue enhanced
Detected in many
adrenal gland:
149.5
AFAP1
ENSSSCG00000023907
ENSG00000196526
Actin filament-associated protein 1
Tissue enhanced
Detected in all
testis:
51.0
AFAP1L1
ENSSSCG00000014431
ENSG00000157510
Actin filament-associated protein 1-like 1
Tissue enriched
Detected in many
lymphoid tissue:
72.8
AFAP1L2
ENSSSCG00000010650
ENSG00000169129
Actin filament associated protein 1 like 2
Tissue enhanced
Detected in all
brain:
44.6
choroid plexus:
44.2
vagus nerve:
62.3
AFDN
ENSSSCG00000004018
ENSG00000130396
Afadin, adherens junction formation factor
Low tissue specificity
Detected in all
AFF2
ENSSSCG00000012730
ENSG00000155966
AF4/FMR2 family member 2
Tissue enhanced
Detected in many
epididymis:
37.8
male glands:
53.3
AGAP3
ENSSSCG00000025610
ENSG00000133612
ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
Low tissue specificity
Detected in all
AGPAT2
ENSSSCG00000040845
ENSG00000169692
1-acyl-sn-glycerol-3-phosphate acyltransferase beta precursor
Low tissue specificity
Detected in many
AGPAT5
ENSSSCG00000015755
ENSG00000155189
1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon
Low tissue specificity
Detected in all
AGRN
ENSSSCG00000022204
ENSG00000188157
Agrin
Low tissue specificity
Detected in all
AGTR1
ENSSSCG00000011695
ENSG00000144891
Type-1 angiotensin II receptor
Tissue enhanced
Detected in many
adipose tissue:
29.1
AHNAK
ENSSSCG00000033010
ENSG00000124942
AHNAK nucleoprotein
Low tissue specificity
Detected in all
AHR
ENSSSCG00000030484
ENSG00000106546,ENSG00000283321
Aryl hydrocarbon receptor
Low tissue specificity
Detected in all
AICDA
ENSSSCG00000000667
ENSG00000111732
Activation induced cytidine deaminase
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
upper respiratory system:
18.7
AIRE
ENSSSCG00000025294
ENSG00000160224
Autoimmune regulator
Tissue enhanced
Detected in some
brain:
8.2
kidney:
7.0
lymphoid tissue:
7.3
pituitary gland:
6.2
AK1
ENSSSCG00000005627
ENSG00000106992
Adenylate kinase isoenzyme 1
Tissue enriched
Detected in many
skeletal muscle:
215.4
AKAIN1
ENSSSCG00000038232
ENSG00000231824
A-kinase anchor inhibitor 1
Tissue enhanced
Detected in all
adrenal gland:
38.5
pituitary gland:
39.9
AKAP7
ENSSSCG00000036790
ENSG00000118507
A-kinase anchoring protein 7
Low tissue specificity
Detected in all
ALDH1A3
ENSSSCG00000004822
ENSG00000184254
Aldehyde dehydrogenase 1 family member A3
Tissue enhanced
Detected in many
mesothelial tissue:
42.7
ALDH1L2
ENSSSCG00000000839
ENSG00000136010
Aldehyde dehydrogenase 1 family member L2
Low tissue specificity
Detected in all
ALDH3A2
ENSSSCG00000018041
ENSG00000072210
Aldehyde dehydrogenase 3 family member A2
Low tissue specificity
Detected in all
ALDH3B1
ENSSSCG00000028501
ENSG00000006534
Aldehyde dehydrogenase family 3 member B1
Tissue enhanced
Detected in many
lung:
26.5
ALOX15B
ENSSSCG00000017978
ENSG00000179593
Arachidonate 15-lipoxygenase, type B
Tissue enriched
Detected in some
mouth:
54.7
ALPK2
ENSSSCG00000004918
ENSG00000198796
Alpha kinase 2
Group enriched
Detected in some
heart:
41.9
skeletal muscle:
21.0
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