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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KIF26A
ENSSSCG00000035093
ENSG00000066735
Kinesin family member 26A
Tissue enhanced
Detected in many
heart:
23.5
KIF27
ENSSSCG00000021571
ENSG00000165115
Kinesin family member 27
Tissue enhanced
Detected in many
choroid plexus:
22.2
fallopian tube:
40.7
testis:
40.2
KIF2C
ENSSSCG00000003931
ENSG00000142945
Kinesin family member 2C
Tissue enriched
Detected in many
testis:
45.6
KIF5A
ENSSSCG00000000439
ENSG00000155980
Kinesin family member 5A
Tissue enriched
Detected in many
brain:
86.8
KIFC1
ENSSSCG00000001510
ENSG00000237649
Kinesin family member C1
Low tissue specificity
Detected in all
KIFC3
ENSSSCG00000002812
ENSG00000140859
Kinesin family member C3
Low tissue specificity
Detected in all
KIRREL1
ENSSSCG00000006453
ENSG00000183853
Kirre like nephrin family adhesion molecule 1
Low tissue specificity
Detected in all
KLF15
ENSSSCG00000036742
ENSG00000163884
Krueppel-like factor 15
Tissue enhanced
Detected in all
liver:
54.8
KLF2
ENSSSCG00000038911
ENSG00000127528
Krueppel-like factor 2
Tissue enhanced
Detected in many
synovial tissue:
136.0
KLF4
ENSSSCG00000005437
ENSG00000136826
Krueppel-like factor 4
Tissue enhanced
Detected in many
synovial tissue:
84.3
KLF5
ENSSSCG00000035101
ENSG00000102554
Krueppel-like factor 5
Tissue enhanced
Detected in many
large intestine:
80.4
stomach:
60.7
upper respiratory system:
64.6
KLF6
ENSSSCG00000035212
ENSG00000067082
Krueppel-like factor 6
Low tissue specificity
Detected in all
KLF7
ENSSSCG00000029998
ENSG00000118263
Krueppel-like factor 7
Low tissue specificity
Detected in all
KLF9
ENSSSCG00000021646
ENSG00000119138
Krueppel-like factor 9
Low tissue specificity
Detected in all
KLHL13
ENSSSCG00000012637
ENSG00000003096
Kelch like family member 13
Tissue enhanced
Detected in many
brain:
33.2
epididymis:
38.4
KLHL14
ENSSSCG00000003733
ENSG00000197705
Kelch like family member 14
Tissue enhanced
Detected in many
kidney:
16.0
male glands:
43.9
thyroid gland:
26.4
KLHL42
ENSSSCG00000000545
ENSG00000087448
Kelch like family member 42
Low tissue specificity
Detected in all
KLHL6
ENSSSCG00000031476
ENSG00000172578
Kelch like family member 6
Tissue enhanced
Detected in many
lymphoid tissue:
53.6
KLK7
ENSSSCG00000032902
ENSG00000169035
Kallikrein-7 precursor
Group enriched
Detected in some
lymphoid tissue:
12.1
skin:
26.6
KLRK1
ENSSSCG00000040465
ENSG00000213809
NKG2-D type II integral membrane protein
Tissue enhanced
Detected in many
lymphoid tissue:
27.6
KMO
ENSSSCG00000025686
ENSG00000117009
Kynurenine 3-monooxygenase
Tissue enhanced
Detected in many
kidney:
24.8
liver:
62.8
KNTC1
ENSSSCG00000039546
ENSG00000184445
Kinetochore associated 1
Low tissue specificity
Detected in all
KREMEN2
ENSSSCG00000035052
ENSG00000131650
Kringle containing transmembrane protein 2
Group enriched
Detected in some
epididymis:
7.5
lymphoid tissue:
15.9
skin:
13.0
upper respiratory system:
4.0
KRT13
ENSSSCG00000017445
ENSG00000171401
Keratin 13
Tissue enriched
Detected in some
mouth:
692.3
KRT14
ENSSSCG00000017448
ENSG00000186847
Keratin 14
Tissue enhanced
Detected in many
large intestine:
131.5
mouth:
166.7
skin:
199.4
KRT15
ENSSSCG00000017444
ENSG00000171346
Keratin 15
Tissue enhanced
Detected in some
esophagus:
57.2
mouth:
174.6
skin:
65.5
upper respiratory system:
44.1
KRT18
ENSSSCG00000000253
ENSG00000111057
Keratin 18
Tissue enhanced
Detected in many
gallbladder:
41.8
male glands:
48.4
salivary gland:
54.6
KRT3
ENSSSCG00000023254
ENSG00000186442
Keratin 3
Tissue enriched
Detected in some
cornea:
465.8
KRT4
ENSSSCG00000024610
ENSG00000170477
Keratin 4
Group enriched
Detected in some
esophagus:
91.9
mouth:
354.0
KRT5
ENSSSCG00000000248
ENSG00000186081
Keratin 5
Group enriched
Detected in many
cornea:
115.8
mouth:
325.7
skin:
162.7
KRT8
ENSSSCG00000000252
ENSG00000170421
Keratin, type II cytoskeletal 8
Tissue enhanced
Detected in many
gallbladder:
64.3
large intestine:
167.1
stomach:
63.3
KSR2
ENSSSCG00000009855
ENSG00000171435
Kinase suppressor of ras 2
Tissue enhanced
Detected in some
brain:
19.3
pineal gland:
12.2
pituitary gland:
21.3
retina:
9.7
KYNU
ENSSSCG00000015673
ENSG00000115919
Kynureninase
Tissue enhanced
Detected in many
breast:
25.1
liver:
44.6
L1CAM
ENSSSCG00000012787
ENSG00000198910
L1 cell adhesion molecule
Tissue enhanced
Detected in many
ductus deferens:
55.0
kidney:
58.6
vagus nerve:
52.3
L3MBTL1
ENSSSCG00000007365
ENSG00000185513
L3MBTL1, histone methyl-lysine binding protein
Tissue enhanced
Detected in many
brain:
14.6
epididymis:
17.9
LAG3
ENSSSCG00000000688
ENSG00000089692
Lymphocyte activation gene 3 protein precursor
Tissue enhanced
Detected in many
cartilage:
22.4
lymphoid tissue:
18.4
LAMA2
ENSSSCG00000033894
ENSG00000196569
Laminin subunit alpha 2
Tissue enhanced
Detected in many
heart:
52.7
synovial tissue:
48.0
LAMA3
ENSSSCG00000003709
ENSG00000053747
Laminin subunit alpha 3
Tissue enhanced
Detected in many
mesothelial tissue:
32.6
skin:
31.3
LAMA4
ENSSSCG00000004425
ENSG00000112769
Laminin subunit alpha 4
Low tissue specificity
Detected in many
LAMA5
ENSSSCG00000032761
ENSG00000130702
Laminin subunit alpha 5
Low tissue specificity
Detected in all
LAMB2
ENSSSCG00000011377
ENSG00000172037
Laminin subunit beta 2
Low tissue specificity
Detected in all
LAMB3
ENSSSCG00000015618
ENSG00000196878
Laminin subunit beta 3
Tissue enhanced
Detected in many
thyroid gland:
48.3
LAMC2
ENSSSCG00000015556
ENSG00000058085
Laminin subunit gamma 2
Tissue enhanced
Detected in many
stomach:
44.7
LAMC3
ENSSSCG00000005710
ENSG00000050555
Laminin subunit gamma 3
Tissue enhanced
Detected in many
penis:
26.8
LAMP1
ENSSSCG00000009555
ENSG00000185896
Lysosome-associated membrane glycoprotein 1 precursor
Low tissue specificity
Detected in all
LAMP3
ENSSSCG00000026097
ENSG00000078081
Lysosomal associated membrane protein 3
Group enriched
Detected in many
lung:
97.7
lymphoid tissue:
55.1
LAP3
ENSSSCG00000023604
ENSG00000002549
Leucine aminopeptidase 3
Tissue enhanced
Detected in all
lens:
115.7
LARGE2
ENSSSCG00000013266
ENSG00000165905
LARGE xylosyl- and glucuronyltransferase 2
Tissue enhanced
Detected in many
male glands:
53.5
salivary gland:
35.3
LAT
ENSSSCG00000007811
ENSG00000213658
Linker for activation of T cells
Tissue enriched
Detected in all
lymphoid tissue:
71.9
LAT2
ENSSSCG00000027487
ENSG00000086730
Linker for activation of T-cells family member 2 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
41.5
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