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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GSE1
ENSSSCG00000002664
ENSG00000131149
Gse1 coiled-coil protein
Tissue enhanced
Detected in all
lymphoid tissue:
79.7
GSTA4
ENSSSCG00000002627
ENSG00000170899
Glutathione S-transferase A4
Tissue enhanced
Detected in many
brain:
43.4
lens:
47.1
pineal gland:
36.6
GSTO2
ENSSSCG00000030271
ENSG00000065621
Glutathione S-transferase omega 2
Tissue enhanced
Detected in all
lymphoid tissue:
22.8
testis:
20.8
GSX2
ENSSSCG00000008840
ENSG00000180613
GS homeobox 2
Tissue enriched
Detected in some
lymphoid tissue:
21.0
GTSE1
ENSSSCG00000000002
ENSG00000075218
G2 and S-phase expressed 1
Tissue enhanced
Detected in many
heart:
21.5
lymphoid tissue:
14.2
GUCY1A1
ENSSSCG00000008866
ENSG00000164116
Guanylate cyclase soluble subunit alpha-3
Low tissue specificity
Detected in many
GUCY1A2
ENSSSCG00000024613
ENSG00000152402
Guanylate cyclase 1 soluble subunit alpha 2
Tissue enhanced
Detected in many
brain:
28.2
lymphoid tissue:
27.3
GUCY1B1
ENSSSCG00000008870
ENSG00000061918
Guanylate cyclase soluble subunit beta-1
Tissue enhanced
Detected in many
pineal gland:
40.0
GULP1
ENSSSCG00000016033
ENSG00000144366
GULP, engulfment adaptor PTB domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
95.7
GXYLT2
ENSSSCG00000011519
ENSG00000172986
Glucoside xylosyltransferase 2
Low tissue specificity
Detected in many
GYG2
ENSSSCG00000038044
ENSG00000056998
Glycogenin 2
Tissue enhanced
Detected in all
adipose tissue:
35.3
GZMM
ENSSSCG00000032810
ENSG00000197540
Granzyme M precursor
Tissue enhanced
Detected in many
lymphoid tissue:
16.2
skeletal muscle:
9.7
H1F0
ENSSSCG00000039348
ENSG00000189060
H1 histone family member 0
Low tissue specificity
Detected in all
H2AFV
ENSSSCG00000016738
ENSG00000105968
H2A histone family member V
Low tissue specificity
Detected in all
H2AFZ
ENSSSCG00000009178
Histone H2A.Z
Tissue enhanced
Detected in all
male glands:
42.6
HAND2
ENSSSCG00000031537
ENSG00000164107
Heart and neural crest derivatives expressed 2
Tissue enhanced
Detected in many
adrenal gland:
35.3
gallbladder:
38.2
heart:
75.3
HASPIN
ENSSSCG00000031821
ENSG00000177602
Histone H3 associated protein kinase
Tissue enriched
Detected in many
testis:
73.8
HAT1
ENSSSCG00000015952
ENSG00000128708
Histone acetyltransferase 1
Low tissue specificity
Detected in all
HBB
ENSSSCG00000014725
Hemoglobin subunit beta
Tissue enriched
Detected in many
dura mater:
663.3
HBM
ENSSSCG00000007977
ENSG00000206177
Hemoglobin subunit mu
Tissue enriched
Detected in many
dura mater:
77.5
HBQ1
ENSSSCG00000038804
ENSG00000086506
Hemoglobin subunit theta 1
Low tissue specificity
Detected in many
HCK
ENSSSCG00000007240
ENSG00000101336
HCK proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in all
lymphoid tissue:
58.8
HDAC11
ENSSSCG00000028031
ENSG00000163517
Histone deacetylase 11
Group enriched
Detected in all
brain:
25.1
testis:
82.3
HDAC2
ENSSSCG00000004432
ENSG00000196591
Histone deacetylase 2
Low tissue specificity
Detected in all
HDAC4
ENSSSCG00000024777
ENSG00000068024
Histone deacetylase 4
Low tissue specificity
Detected in all
HDAC9
ENSSSCG00000015368
ENSG00000048052
Histone deacetylase 9
Tissue enhanced
Detected in all
cartilage:
53.6
HEBP1
ENSSSCG00000040275
ENSG00000013583
Heme-binding protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.5
male glands:
38.7
HECW2
ENSSSCG00000016068
ENSG00000138411
E3 ubiquitin-protein ligase HECW2
Low tissue specificity
Detected in many
HELLS
ENSSSCG00000010486
ENSG00000119969
Helicase, lymphoid specific
Low tissue specificity
Detected in all
HES4
ENSSSCG00000035420
ENSG00000188290
Hes family bHLH transcription factor 4
Low tissue specificity
Detected in all
HEYL
ENSSSCG00000038956
ENSG00000163909
Hes related family bHLH transcription factor with YRPW motif-like
Low tissue specificity
Detected in many
HGF
ENSSSCG00000015403
ENSG00000019991
Hepatocyte growth factor
Tissue enhanced
Detected in many
liver:
19.6
HHEX
ENSSSCG00000036314
ENSG00000152804
Hematopoietically-expressed homeobox protein HHEX
Tissue enhanced
Detected in many
thyroid gland:
19.5
HHIP
ENSSSCG00000009045
ENSG00000164161
Hedgehog interacting protein
Tissue enhanced
Detected in many
cartilage:
79.0
lymphoid tissue:
59.2
HIC1
ENSSSCG00000025717
ENSG00000177374
HIC ZBTB transcriptional repressor 1
Low tissue specificity
Detected in many
HID1
ENSSSCG00000017219
ENSG00000167861
HID1 domain containing
Tissue enhanced
Detected in many
male glands:
54.1
stomach:
43.9
HIF3A
ENSSSCG00000003101
ENSG00000124440
Hypoxia inducible factor 3 alpha subunit
Tissue enhanced
Detected in many
breast:
38.6
heart:
44.0
HIP1
ENSSSCG00000007700
ENSG00000127946
Huntingtin interacting protein 1
Low tissue specificity
Detected in all
HIP1R
ENSSSCG00000009786
ENSG00000130787
Huntingtin interacting protein 1 related
Low tissue specificity
Detected in many
HIST1H1D
ENSSSCG00000001137
ENSG00000124575
Histone cluster 1 H1 family member d
Tissue enhanced
Detected in all
lymphoid tissue:
98.1
HIST1H2AC
ENSSSCG00000033606
ENSG00000180573
Histone cluster 1 H2A family member c
Low tissue specificity
Detected in all
HIST1H2AJ
ENSSSCG00000032609
ENSG00000276368
Histone cluster 1 H2A family member j
Tissue enhanced
Detected in many
lymphoid tissue:
104.2
upper respiratory system:
68.0
HIST1H2BB
ENSSSCG00000031122
ENSG00000276410
Histone cluster 1 H2B family member b
Tissue enhanced
Detected in all
lymphoid tissue:
131.4
HIST1H2BN
ENSSSCG00000040923
ENSG00000233822
Histone cluster 1 H2B family member n
Tissue enhanced
Detected in many
lymphoid tissue:
119.5
upper respiratory system:
51.8
HIST1H3E
ENSSSCG00000039112
ENSG00000278272
Histone H3.1
Tissue enhanced
Detected in many
lymphoid tissue:
96.8
upper respiratory system:
67.8
HIST2H2AB
ENSSSCG00000037533
ENSG00000184270
Histone cluster 2 H2A family member b
Tissue enhanced
Detected in all
lymphoid tissue:
59.4
HIST3H2A
ENSSSCG00000040622
ENSG00000181218
Histone cluster 3 H2A
Tissue enhanced
Detected in many
brain:
23.1
pituitary gland:
23.2
HJURP
ENSSSCG00000016313
ENSG00000123485
Holliday junction recognition protein
Tissue enhanced
Detected in many
lymphoid tissue:
11.2
testis:
15.2
HK2
ENSSSCG00000008261
ENSG00000159399
Hexokinase-2
Low tissue specificity
Detected in many
HLA-DRA
ENSSSCG00000001453
ENSG00000204287
MHC class II DR-alpha precursor
Tissue enhanced
Detected in many
lymphoid tissue:
150.4
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