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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GJC1
ENSSSCG00000021306
ENSG00000182963
Gap junction gamma-1 protein
Tissue enhanced
Detected in many
smooth muscle:
33.0
GLCCI1
ENSSSCG00000015345
ENSG00000106415
Glucocorticoid induced 1
Tissue enhanced
Detected in all
lymphoid tissue:
47.4
GLDC
ENSSSCG00000005199
ENSG00000178445
Glycine decarboxylase
Group enriched
Detected in many
epididymis:
38.7
lens:
35.9
liver:
19.2
retina:
14.6
GLIS3
ENSSSCG00000005224
ENSG00000107249
GLIS family zinc finger 3
Tissue enhanced
Detected in many
male glands:
75.0
GLUL
ENSSSCG00000015545
ENSG00000135821
Glutamine synthetase
Tissue enhanced
Detected in all
brain:
161.1
GMFB
ENSSSCG00000026294
ENSG00000197045
Glia maturation factor beta
Tissue enhanced
Detected in all
brain:
40.7
GMPR
ENSSSCG00000001064
ENSG00000137198
Guanosine monophosphate reductase
Tissue enhanced
Detected in all
heart:
44.1
skeletal muscle:
71.7
GNA14
ENSSSCG00000005284
ENSG00000156049
Guanine nucleotide-binding protein subunit alpha-14
Low tissue specificity
Detected in many
GNAI1
ENSSSCG00000015407
ENSG00000127955
G protein subunit alpha i1
Tissue enhanced
Detected in many
brain:
40.3
GNG11
ENSSSCG00000015324
ENSG00000127920
G protein subunit gamma 11
Low tissue specificity
Detected in many
GNG8
ENSSSCG00000022068
ENSG00000167414
G protein subunit gamma 8
Tissue enhanced
Detected in many
brain:
65.1
GOLGA7B
ENSSSCG00000040359
ENSG00000155265
Golgin A7 family member B
Group enriched
Detected in many
brain:
21.4
skin:
13.3
testis:
22.9
GP1BA
ENSSSCG00000017908
ENSG00000185245
Glycoprotein Ib platelet alpha subunit
Tissue enhanced
Detected in some
epididymis:
9.6
fallopian tube:
11.7
thyroid gland:
37.5
GP91-PHOX
ENSSSCG00000012229
ENSG00000165168
Cytochrome b-245 heavy chain precursor
Tissue enhanced
Detected in many
lung:
31.0
lymphoid tissue:
49.0
synovial tissue:
37.3
GPC4
ENSSSCG00000012679
ENSG00000076716
Glypican 4
Tissue enhanced
Detected in many
ovary:
45.2
GPD1L
ENSSSCG00000021977
ENSG00000152642
Glycerol-3-phosphate dehydrogenase 1 like
Tissue enhanced
Detected in all
male glands:
70.5
GPR132
ENSSSCG00000036892
ENSG00000183484
G protein-coupled receptor 132
Tissue enhanced
Detected in many
lymphoid tissue:
17.2
stomach:
13.0
GPR15
ENSSSCG00000011979
ENSG00000154165
G protein-coupled receptor 15
Tissue enhanced
Detected in some
large intestine:
24.6
liver:
12.5
lymphoid tissue:
9.7
stomach:
9.6
GPR162
ENSSSCG00000000680
ENSG00000250510
G protein-coupled receptor 162
Tissue enhanced
Detected in some
brain:
25.9
pineal gland:
21.5
GPR174
ENSSSCG00000021734
ENSG00000147138
G protein-coupled receptor 174
Tissue enhanced
Detected in many
lymphoid tissue:
34.9
GPR182
ENSSSCG00000037701
ENSG00000166856
G protein-coupled receptor 182
Tissue enhanced
Detected in many
liver:
15.5
lymphoid tissue:
19.2
GPR19
ENSSSCG00000040400
ENSG00000183150
G protein-coupled receptor 19
Tissue enhanced
Detected in many
brain:
11.6
lymphoid tissue:
16.7
testis:
14.5
GPR25
ENSSSCG00000037641
ENSG00000170128
G protein-coupled receptor 25
Tissue enhanced
Detected in some
lung:
12.1
stomach:
29.2
upper respiratory system:
11.9
GPR35
ENSSSCG00000040095
ENSG00000178623
G protein-coupled receptor 35
Tissue enhanced
Detected in many
lymphoid tissue:
13.5
stomach:
19.9
GPR55
ENSSSCG00000035592
ENSG00000135898
G protein-coupled receptor 55
Tissue enhanced
Detected in some
large intestine:
7.5
lymphoid tissue:
9.0
small intestine:
6.9
stomach:
11.5
testis:
5.4
GPR65
ENSSSCG00000021146
ENSG00000140030
G protein-coupled receptor 65
Tissue enhanced
Detected in many
lymphoid tissue:
18.7
GPR82
ENSSSCG00000012254
ENSG00000171657
Probable G-protein coupled receptor 82
Tissue enriched
Detected in many
lymphoid tissue:
45.6
GPR84
ENSSSCG00000000291
ENSG00000139572
G-protein coupled receptor 84
Tissue enhanced
Detected in many
dura mater:
11.2
lymphoid tissue:
9.0
upper respiratory system:
10.1
GPRASP1
ENSSSCG00000012519
ENSG00000198932
G protein-coupled receptor associated sorting protein 1
Group enriched
Detected in many
brain:
27.5
pineal gland:
9.4
pituitary gland:
24.3
GPRASP2
ENSSSCG00000012521
ENSG00000158301
G protein-coupled receptor associated sorting protein 2
Tissue enhanced
Detected in many
brain:
35.6
pituitary gland:
31.8
GPRIN3
ENSSSCG00000039821
ENSG00000185477
GPRIN family member 3
Tissue enhanced
Detected in many
brain:
34.2
lymphoid tissue:
35.7
pineal gland:
34.6
GPRL15
ENSSSCG00000024634
ENSG00000188373
Protein GPR15L
Tissue enhanced
Detected in some
large intestine:
118.4
lymphoid tissue:
26.5
salivary gland:
27.7
upper respiratory system:
37.9
GPT2
ENSSSCG00000002847
ENSG00000166123
Glutamic--pyruvic transaminase 2
Tissue enhanced
Detected in many
brain:
43.4
kidney:
59.2
liver:
39.4
GPX1
ENSSSCG00000033727
Glutathione peroxidase 1
Low tissue specificity
Detected in all
GPX2
ENSSSCG00000002279
ENSG00000176153
Glutathione peroxidase 2
Group enriched
Detected in some
large intestine:
226.7
upper respiratory system:
96.9
GPX3
ENSSSCG00000036438
ENSG00000211445
Glutathione peroxidase 3 precursor
Group enriched
Detected in many
kidney:
521.1
ovary:
496.9
GRAMD2B
ENSSSCG00000022402
ENSG00000155324
GRAM domain-containing protein 3
Low tissue specificity
Detected in many
GRAP2
ENSSSCG00000000080
ENSG00000100351
GRB2-related adaptor protein 2
Tissue enhanced
Detected in all
lymphoid tissue:
44.2
GRB14
ENSSSCG00000015901
ENSG00000115290
Growth factor receptor bound protein 14
Tissue enhanced
Detected in many
adrenal gland:
78.9
liver:
34.4
testis:
29.8
GREM1
ENSSSCG00000033657
ENSG00000166923
Gremlin 1, DAN family BMP antagonist
Tissue enhanced
Detected in many
cartilage:
38.7
gallbladder:
38.9
kidney:
37.6
small intestine:
50.0
smooth muscle:
39.8
GRHL1
ENSSSCG00000026068
ENSG00000134317
Grainyhead like transcription factor 1
Tissue enhanced
Detected in many
mouth:
24.3
salivary gland:
28.2
skin:
42.7
GRIA2
ENSSSCG00000024685
ENSG00000120251
Glutamate ionotropic receptor AMPA type subunit 2
Tissue enriched
Detected in some
brain:
47.1
GRIK5
ENSSSCG00000003038
ENSG00000105737
Glutamate ionotropic receptor kainate type subunit 5
Tissue enhanced
Detected in many
testis:
30.5
GRIN3A
ENSSSCG00000005400
ENSG00000198785
Glutamate ionotropic receptor NMDA type subunit 3A
Tissue enhanced
Detected in many
brain:
13.1
GRIP1
ENSSSCG00000000478
ENSG00000155974
Glutamate receptor interacting protein 1
Low tissue specificity
Detected in many
GRK3
ENSSSCG00000009956
ENSG00000100077
G protein-coupled receptor kinase 3
Tissue enhanced
Detected in all
lymphoid tissue:
61.3
GRK4
ENSSSCG00000008694
ENSG00000125388
G protein-coupled receptor kinase 4
Tissue enriched
Detected in many
testis:
73.1
GRK5
ENSSSCG00000010683
ENSG00000198873
G protein-coupled receptor kinase 5
Tissue enriched
Detected in many
cartilage:
92.6
GRM7
ENSSSCG00000023891
ENSG00000196277
Glutamate metabotropic receptor 7
Tissue enhanced
Detected in all
brain:
19.8
pineal gland:
48.5
GRN
ENSSSCG00000017355
ENSG00000030582
Granulins precursor
Low tissue specificity
Detected in all
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