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Human disease related genes
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Keyword
Chromosome
1
2
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7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HLX
ENSSSCG00000032644
ENSG00000136630
H2.0 like homeobox
Tissue enhanced
Detected in many
bone marrow:
24.1
HMCN1
ENSSSCG00000035595
ENSG00000143341
Hemicentin 1
Tissue enhanced
Detected in many
lymphoid tissue:
36.7
HMGB1
ENSSSCG00000009327
ENSG00000189403
High mobility group protein B1
Low tissue specificity
Detected in all
HMGB2
ENSSSCG00000009704
ENSG00000164104
High mobility group protein B2
Tissue enhanced
Detected in all
lymphoid tissue:
86.5
HMGN5
ENSSSCG00000032946
ENSG00000198157
High mobility group nucleosome binding domain 5
Tissue enhanced
Detected in all
lymphoid tissue:
21.5
HMMR
ENSSSCG00000017022
ENSG00000072571
Hyaluronan mediated motility receptor
Low tissue specificity
Detected in all
HMOX1
ENSSSCG00000039745
ENSG00000100292
Heme oxygenase 1
Tissue enriched
Detected in many
lymphoid tissue:
118.9
HOMER1
ENSSSCG00000014113
ENSG00000152413
Homer protein homolog 1
Tissue enhanced
Detected in many
brain:
51.9
skeletal muscle:
39.4
HOMER3
ENSSSCG00000013919
ENSG00000051128
Homer scaffolding protein 3
Tissue enhanced
Detected in many
cornea:
25.4
skeletal muscle:
30.3
HOOK1
ENSSSCG00000003826
ENSG00000134709
Hook microtubule tethering protein 1
Tissue enhanced
Detected in many
pineal gland:
51.2
salivary gland:
64.1
testis:
39.8
HOOK2
ENSSSCG00000013734
ENSG00000095066
Hook microtubule tethering protein 2
Low tissue specificity
Detected in many
HOXB2
ENSSSCG00000017533
ENSG00000173917
Homeobox B2
Tissue enhanced
Detected in many
male glands:
48.0
HOXB3
ENSSSCG00000017534
ENSG00000120093
Homeobox B3
Tissue enhanced
Detected in many
male glands:
64.2
HOXB4
ENSSSCG00000017535
ENSG00000182742
Homeobox B4
Tissue enhanced
Detected in many
epididymis:
47.8
male glands:
83.5
HOXB6
ENSSSCG00000017539
ENSG00000108511
Homeobox B6
Group enriched
Detected in many
epididymis:
55.3
male glands:
186.0
HOXC6
ENSSSCG00000030585
ENSG00000197757
Homeobox C6
Tissue enhanced
Detected in many
breast:
26.7
kidney:
36.7
HOXD3
ENSSSCG00000015985
ENSG00000128652
Homeobox D3
Tissue enhanced
Detected in many
epididymis:
21.2
kidney:
23.0
male glands:
57.4
HOXD4
ENSSSCG00000015984
ENSG00000170166
Homeobox D4
Tissue enhanced
Detected in many
epididymis:
59.9
kidney:
38.0
male glands:
48.8
HOXD9
ENSSSCG00000015982
ENSG00000128709
Homeobox D9
Tissue enhanced
Detected in many
cartilage:
40.7
epididymis:
30.9
kidney:
34.1
male glands:
31.3
HPGDS
ENSSSCG00000009194
ENSG00000163106
Hematopoietic prostaglandin D synthase
Tissue enhanced
Detected in many
lymphoid tissue:
17.0
skin:
15.4
HRCT1
ENSSSCG00000035720
ENSG00000196196
Histidine rich carboxyl terminus 1
Tissue enhanced
Detected in many
penis:
46.2
HS1BP3
ENSSSCG00000030115
ENSG00000118960
HCLS1 binding protein 3
Low tissue specificity
Detected in all
HS3ST1
ENSSSCG00000021515
ENSG00000002587
Heparan sulfate-glucosamine 3-sulfotransferase 1
Tissue enhanced
Detected in many
cartilage:
54.1
epididymis:
32.4
HSPA2
ENSSSCG00000002274
ENSG00000126803
Heat shock protein family A (Hsp70) member 2
Tissue enhanced
Detected in many
brain:
72.2
cornea:
50.0
testis:
72.1
vagus nerve:
68.5
HSPA4L
ENSSSCG00000009077
ENSG00000164070
Heat shock protein family A (Hsp70) member 4 like
Tissue enriched
Detected in all
testis:
101.7
HSPB1
ENSSSCG00000039962
ENSG00000106211
Heat shock protein beta-1
Low tissue specificity
Detected in all
HSPB6
ENSSSCG00000023498
ENSG00000004776
Heat shock protein family B (small) member 6
Tissue enhanced
Detected in many
skeletal muscle:
207.1
smooth muscle:
238.3
HSPG2
ENSSSCG00000003514
ENSG00000142798
Heparan sulfate proteoglycan 2
Low tissue specificity
Detected in many
HTR4
ENSSSCG00000014428
ENSG00000164270
5-hydroxytryptamine receptor 4
Tissue enhanced
Detected in many
epididymis:
23.1
lens:
25.9
small intestine:
32.0
testis:
33.2
HTRA3
ENSSSCG00000008723
ENSG00000170801
Serine protease HTRA3 precursor
Tissue enhanced
Detected in many
lens:
46.6
mesothelial tissue:
88.8
HTRA4
ENSSSCG00000015810
ENSG00000169495
HtrA serine peptidase 4
Group enriched
Detected in many
cartilage:
44.7
lymphoid tissue:
22.2
synovial tissue:
57.7
HUNK
ENSSSCG00000029392
ENSG00000142149
Hormonally up-regulated Neu-associated kinase
Tissue enhanced
Detected in many
cornea:
35.6
lens:
35.0
ovary:
37.7
HVCN1
ENSSSCG00000009827
ENSG00000122986
Hydrogen voltage gated channel 1
Group enriched
Detected in many
choroid plexus:
88.8
lymphoid tissue:
24.2
HYAL1
ENSSSCG00000011404
ENSG00000114378
Hyaluronidase-1 precursor
Tissue enhanced
Detected in many
gallbladder:
31.6
large intestine:
32.2
stomach:
37.6
HYAL3
ENSSSCG00000011402
ENSG00000186792
Hyaluronidase-3 precursor
Low tissue specificity
Detected in many
ICAM1
ENSSSCG00000013655
ENSG00000090339
Intercellular adhesion molecule 1 precursor
Tissue enhanced
Detected in many
lung:
45.5
ICOS
ENSSSCG00000025042
ENSG00000163600
Tissue enhanced
Detected in some
large intestine:
7.4
lymphoid tissue:
24.6
stomach:
7.7
upper respiratory system:
7.3
ID2
ENSSSCG00000008645
ENSG00000115738
DNA-binding protein inhibitor ID-2
Tissue enhanced
Detected in many
cartilage:
124.2
ID4
ENSSSCG00000024312
ENSG00000172201
DNA-binding protein inhibitor ID-4
Tissue enhanced
Detected in many
ductus deferens:
49.5
IER3
ENSSSCG00000027607
ENSG00000137331
Immediate early response 3
Tissue enhanced
Detected in many
cartilage:
140.2
IER5L
ENSSSCG00000005673
ENSG00000188483
Immediate early response 5 like
Low tissue specificity
Detected in many
IFI30
ENSSSCG00000013901
ENSG00000216490
Gamma-interferon-inducible-lysosomal thiol reductase
Tissue enhanced
Detected in many
lymphoid tissue:
50.2
ovary:
51.3
IFITM3
ENSSSCG00000038912
Interferon-induced transmembrane protein 3
Low tissue specificity
Detected in many
IFT43
ENSSSCG00000002386
ENSG00000119650
Intraflagellar transport 43
Low tissue specificity
Detected in all
IFT57
ENSSSCG00000011941
ENSG00000114446
Intraflagellar transport 57
Tissue enhanced
Detected in all
lens:
117.6
IFT80
ENSSSCG00000011733
ENSG00000068885
Intraflagellar transport 80
Low tissue specificity
Detected in all
IGDCC3
ENSSSCG00000004932
ENSG00000174498
Immunoglobulin superfamily DCC subclass member 3
Tissue enhanced
Detected in many
brain:
12.9
lymphoid tissue:
13.1
IGDCC4
ENSSSCG00000004931
ENSG00000103742
Immunoglobulin superfamily DCC subclass member 4
Tissue enhanced
Detected in many
adrenal gland:
39.0
IGFBP2
ENSSSCG00000035392
ENSG00000115457
Insulin-like growth factor-binding protein 2
Tissue enhanced
Detected in many
choroid plexus:
61.1
cornea:
73.1
liver:
114.0
IGFBP3
ENSSSCG00000038783
ENSG00000146674
Insulin-like growth factor-binding protein 3
Tissue enhanced
Detected in many
upper respiratory system:
84.2
urinary bladder:
77.7
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