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Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FRZB
ENSSSCG00000016018
ENSG00000162998
Secreted frizzled-related protein 3 precursor
Tissue enhanced
Detected in many
heart:
72.7
pineal gland:
62.3
FSTL1
ENSSSCG00000039426
ENSG00000163430
Follistatin like 1
Tissue enhanced
Detected in all
mesothelial tissue:
125.1
FTL
ENSSSCG00000003153
ENSG00000087086
Ferritin light chain
Tissue enhanced
Detected in all
lens:
546.5
FURIN
ENSSSCG00000001817
ENSG00000140564
Furin, paired basic amino acid cleaving enzyme
Tissue enhanced
Detected in all
epididymis:
105.6
FUT4
ENSSSCG00000014958
ENSG00000196371
Fucosyltransferase 4
Tissue enhanced
Detected in many
stomach:
57.6
FUT7
ENSSSCG00000037554
ENSG00000180549
Fucosyltransferase 7
Tissue enriched
Detected in some
lymphoid tissue:
18.8
FXYD1
ENSSSCG00000021374
ENSG00000266964
FXYD domain containing ion transport regulator 1
Tissue enhanced
Detected in all
choroid plexus:
197.1
skeletal muscle:
150.3
FXYD6
ENSSSCG00000015083
ENSG00000137726
FXYD domain containing ion transport regulator 6
Low tissue specificity
Detected in all
FYB1
ENSSSCG00000016855
ENSG00000082074
FYN binding protein 1
Tissue enriched
Detected in all
lymphoid tissue:
145.6
FZD10
ENSSSCG00000009751
ENSG00000111432
Frizzled class receptor 10
Tissue enhanced
Detected in many
pineal gland:
20.1
skin:
20.3
FZD3
ENSSSCG00000009679
ENSG00000104290
Frizzled class receptor 3
Tissue enhanced
Detected in many
brain:
25.7
FZD6
ENSSSCG00000006052
ENSG00000164930
Frizzled-6 precursor
Low tissue specificity
Detected in all
FZD8
ENSSSCG00000033001
ENSG00000177283
Frizzled class receptor 8
Tissue enhanced
Detected in many
cartilage:
88.3
G0S2
ENSSSCG00000015617
ENSG00000123689
G0/G1 switch protein 2
Tissue enhanced
Detected in many
bone marrow:
44.5
liver:
48.4
GAA
ENSSSCG00000017156
ENSG00000171298
Glucosidase alpha, acid
Low tissue specificity
Detected in all
GADD45A
ENSSSCG00000037066
ENSG00000116717
Growth arrest and DNA damage-inducible protein GADD45 alpha
Tissue enhanced
Detected in many
lens:
32.5
GADD45B
ENSSSCG00000022689
ENSG00000099860
Growth arrest and DNA damage inducible beta
Low tissue specificity
Detected in all
GALNT18
ENSSSCG00000013403
ENSG00000110328
Polypeptide N-acetylgalactosaminyltransferase 18
Tissue enriched
Detected in many
cartilage:
84.5
GALT
ENSSSCG00000010969
ENSG00000213930
Galactose-1-phosphate uridylyltransferase
Low tissue specificity
Detected in all
GAMT
ENSSSCG00000023142
ENSG00000130005
Guanidinoacetate N-methyltransferase
Tissue enriched
Detected in many
liver:
108.3
GAREM1
ENSSSCG00000003731
ENSG00000141441
GRB2 associated regulator of MAPK1 subtype 1
Tissue enhanced
Detected in all
cartilage:
48.6
GAREM2
ENSSSCG00000008572
ENSG00000157833
GRB2 associated regulator of MAPK1 subtype 2
Tissue enhanced
Detected in many
brain:
13.7
GARNL3
ENSSSCG00000005609
ENSG00000136895
GTPase activating Rap/RanGAP domain like 3
Tissue enhanced
Detected in many
brain:
20.6
liver:
30.3
salivary gland:
21.8
GAS1
ENSSSCG00000033321
ENSG00000180447
Growth arrest specific 1
Tissue enhanced
Detected in many
cartilage:
79.4
mesothelial tissue:
89.8
GAS2L1
ENSSSCG00000025564
ENSG00000185340
GAS2-like protein 1
Low tissue specificity
Detected in all
GAS6
ENSSSCG00000009565
ENSG00000183087
Growth arrest-specific protein 6 precursor
Low tissue specificity
Detected in many
GAS7
ENSSSCG00000039056
ENSG00000007237
Growth arrest specific 7
Tissue enhanced
Detected in all
vagus nerve:
87.1
GATA2
ENSSSCG00000011618
ENSG00000179348
Endothelial transcription factor GATA-2
Tissue enriched
Detected in many
male glands:
214.6
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GATA5
ENSSSCG00000007538
ENSG00000130700
GATA binding protein 5
Tissue enhanced
Detected in many
adipose tissue:
32.2
mesothelial tissue:
60.4
small intestine:
29.7
stomach:
45.3
GATA6
ENSSSCG00000003702
ENSG00000141448
Transcription factor GATA-6
Tissue enhanced
Detected in many
adrenal gland:
48.9
heart:
39.4
ovary:
36.9
stomach:
41.6
GCAT
ENSSSCG00000029945
ENSG00000100116
Glycine C-acetyltransferase
Tissue enriched
Detected in many
liver:
49.9
GCNT1
ENSSSCG00000005277
ENSG00000187210
Glucosaminyl (N-acetyl) transferase 1, core 2
Tissue enhanced
Detected in many
male glands:
50.9
GCNT4
ENSSSCG00000029710
ENSG00000176928
Glucosaminyl (N-acetyl) transferase 4, core 2
Tissue enhanced
Detected in all
lymphoid tissue:
20.5
thyroid gland:
30.9
GCSAM
ENSSSCG00000021511
ENSG00000174500
Germinal center-associated signaling and motility protein
Tissue enhanced
Detected in many
lymphoid tissue:
40.5
upper respiratory system:
29.3
GDPD2
ENSSSCG00000012376
ENSG00000130055
Glycerophosphodiester phosphodiesterase domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
25.2
skin:
29.3
GEM
ENSSSCG00000006105
ENSG00000164949
GTP binding protein overexpressed in skeletal muscle
Tissue enhanced
Detected in many
cartilage:
62.6
GEN1
ENSSSCG00000008613
ENSG00000178295
GEN1, Holliday junction 5' flap endonuclease
Tissue enhanced
Detected in many
lymphoid tissue:
15.1
testis:
8.2
GFI1
ENSSSCG00000006902
ENSG00000162676
Growth factor independent 1 transcriptional repressor
Tissue enhanced
Detected in many
lymphoid tissue:
39.4
small intestine:
14.5
stomach:
23.7
GFRA1
ENSSSCG00000010655
ENSG00000151892
GDNF family receptor alpha 1
Low tissue specificity
Detected in many
GGT5
ENSSSCG00000010055
ENSG00000099998
Gamma-glutamyltransferase 5
Low tissue specificity
Detected in all
GHR
ENSSSCG00000016866
ENSG00000112964
Growth hormone receptor precursor
Tissue enhanced
Detected in many
adipose tissue:
57.2
bone marrow:
51.3
liver:
42.1
GIMAP7
ENSSSCG00000031897
ENSG00000179144
GTPase, IMAP family member 7
Tissue enhanced
Detected in many
large intestine:
13.1
lymphoid tissue:
26.4
GIMAP8
ENSSSCG00000016452
ENSG00000171115
GTPase, IMAP family member 8
Tissue enhanced
Detected in many
lymphoid tissue:
34.0
GINS2
ENSSSCG00000040386
ENSG00000131153
GINS complex subunit 2
Group enriched
Detected in all
lymphoid tissue:
44.7
stomach:
11.6
GIPC3
ENSSSCG00000036190
ENSG00000179855
GIPC PDZ domain containing family member 3
Tissue enhanced
Detected in many
lymphoid tissue:
24.7
GJA1
ENSSSCG00000004241
ENSG00000152661
Gap junction alpha-1 protein
Tissue enhanced
Detected in many
skin:
144.1
GJA4
ENSSSCG00000039983
ENSG00000187513
Gap junction alpha-4 protein
Tissue enhanced
Detected in many
aorta:
31.8
mesothelial tissue:
39.2
GJA5
ENSSSCG00000006696
ENSG00000265107
Gap junction protein alpha 5
Low tissue specificity
Detected in many
GJB2
ENSSSCG00000031936
ENSG00000165474
Gap junction protein beta 2
Group enriched
Detected in many
cornea:
90.1
male glands:
37.5
mouth:
41.1
skin:
52.8
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