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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DYSF
ENSSSCG00000008312
ENSG00000135636
Dysferlin
Tissue enhanced
Detected in all
skeletal muscle:
45.7
E2F1
ENSSSCG00000007268
ENSG00000101412
E2F transcription factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
25.7
E2F2
ENSSSCG00000032710
ENSG00000007968
E2F transcription factor 2
Tissue enhanced
Detected in many
large intestine:
16.2
lymphoid tissue:
38.3
stomach:
18.6
E2F7
ENSSSCG00000000950
ENSG00000165891
E2F transcription factor 7
Tissue enhanced
Detected in many
brain:
13.0
lymphoid tissue:
16.4
upper respiratory system:
15.9
E2F8
ENSSSCG00000013352
ENSG00000129173
E2F transcription factor 8
Tissue enhanced
Detected in many
lymphoid tissue:
27.2
EAF2
ENSSSCG00000011880
ENSG00000145088
ELL associated factor 2
Tissue enhanced
Detected in many
lymphoid tissue:
40.8
small intestine:
24.3
upper respiratory system:
25.6
EBF1
ENSSSCG00000017046
ENSG00000164330
Early B cell factor 1
Tissue enhanced
Detected in many
adipose tissue:
65.3
bone marrow:
66.5
EBF3
ENSSSCG00000010757
ENSG00000108001
Early B cell factor 3
Tissue enhanced
Detected in many
adipose tissue:
32.3
EBI3
ENSSSCG00000013498
ENSG00000105246
Interleukin-27 subunit beta precursor
Tissue enhanced
Detected in many
lymphoid tissue:
16.4
ECHDC3
ENSSSCG00000011119
ENSG00000134463
Enoyl-CoA hydratase domain containing 3
Tissue enhanced
Detected in all
liver:
76.2
ECI1
ENSSSCG00000034338
ENSG00000167969
Enoyl-CoA delta isomerase 1, mitochondrial
Tissue enhanced
Detected in all
liver:
96.2
ECI2
ENSSSCG00000001000
ENSG00000198721
Enoyl-CoA delta isomerase 2, mitochondrial
Tissue enhanced
Detected in all
liver:
61.0
ECM1
ENSSSCG00000029230
ENSG00000143369
Extracellular matrix protein 1
Tissue enhanced
Detected in many
mouth:
84.5
synovial tissue:
66.5
ECT2
ENSSSCG00000035746
ENSG00000114346
Epithelial cell transforming 2
Tissue enhanced
Detected in all
lymphoid tissue:
23.4
testis:
23.6
EDDM3B
ENSSSCG00000021866
ENSG00000181552,ENSG00000181562
Epididymal secretory protein E3-beta precursor
Group enriched
Detected in many
ductus deferens:
54.5
epididymis:
177.7
male glands:
55.5
testis:
77.3
EDEM1
ENSSSCG00000034197
ENSG00000134109
ER degradation enhancing alpha-mannosidase like protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
66.0
EDNRB
ENSSSCG00000009477
ENSG00000136160
Endothelin receptor type B
Tissue enhanced
Detected in many
adrenal gland:
64.1
choroid plexus:
64.7
cornea:
49.8
ovary:
62.6
EEF1A2
ENSSSCG00000040401
ENSG00000101210
Eukaryotic translation elongation factor 1 alpha 2
Tissue enhanced
Detected in many
brain:
76.6
heart:
176.3
skeletal muscle:
328.9
EEPD1
ENSSSCG00000039703
ENSG00000122547
Endonuclease/exonuclease/phosphatase family domain containing 1
Tissue enhanced
Detected in many
adipose tissue:
46.7
skeletal muscle:
33.4
EFEMP1
ENSSSCG00000008397
ENSG00000115380
EGF-containing fibulin-like extracellular matrix protein 1 precursor
Tissue enhanced
Detected in all
cornea:
98.9
EFEMP2
ENSSSCG00000012971
ENSG00000172638
EGF containing fibulin extracellular matrix protein 2
Low tissue specificity
Detected in all
EFHC1
ENSSSCG00000002620
ENSG00000096093
EF-hand domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
26.5
fallopian tube:
34.6
testis:
36.3
upper respiratory system:
37.3
EFHD2
ENSSSCG00000003458
ENSG00000142634
EF-hand domain family member D2
Tissue enhanced
Detected in all
stomach:
162.8
EFNA1
ENSSSCG00000006530
ENSG00000169242
Ephrin-A1 precursor
Low tissue specificity
Detected in all
EFNA2
ENSSSCG00000038701
ENSG00000099617
Ephrin A2
Tissue enriched
Detected in many
lymphoid tissue:
27.9
EFNB2
ENSSSCG00000009535
ENSG00000125266
Ephrin-B2
Low tissue specificity
Detected in all
EFNB3
ENSSSCG00000017948
ENSG00000108947
Ephrin-B3 precursor
Tissue enhanced
Detected in some
brain:
23.3
pituitary gland:
7.9
EGFL7
ENSSSCG00000005828
ENSG00000172889
EGF like domain multiple 7
Low tissue specificity
Detected in all
EGLN3
ENSSSCG00000001963
ENSG00000129521
Egl-9 family hypoxia inducible factor 3
Tissue enhanced
Detected in many
lens:
59.1
EHBP1L1
ENSSSCG00000012988
ENSG00000173442
EH domain binding protein 1 like 1
Low tissue specificity
Detected in many
EHD1
ENSSSCG00000013017
ENSG00000110047
EH domain containing 1
Low tissue specificity
Detected in all
EHD2
ENSSSCG00000023371
ENSG00000024422
EH domain containing 2
Tissue enhanced
Detected in many
adipose tissue:
96.4
EHD3
ENSSSCG00000035987
ENSG00000013016
EH domain containing 3
Tissue enhanced
Detected in many
adrenal gland:
26.4
lens:
31.8
lymphoid tissue:
22.8
EHF
ENSSSCG00000013300
ENSG00000135373
ETS homologous factor
Tissue enhanced
Detected in many
male glands:
88.9
salivary gland:
88.8
upper respiratory system:
80.8
ELF3
ENSSSCG00000010922
ENSG00000163435
E74 like ETS transcription factor 3
Tissue enhanced
Detected in many
large intestine:
35.4
stomach:
54.7
upper respiratory system:
50.1
urinary bladder:
61.1
ELF4
ENSSSCG00000012656
ENSG00000102034
E74 like ETS transcription factor 4
Tissue enhanced
Detected in many
stomach:
41.7
ELL3
ENSSSCG00000004699
ENSG00000128886
Elongation factor for RNA polymerase II 3
Tissue enhanced
Detected in many
lymphoid tissue:
52.8
upper respiratory system:
22.4
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
ELOVL3
ENSSSCG00000010577
ENSG00000119915
Elongation of very long chain fatty acids protein 3
Tissue enhanced
Detected in many
lymphoid tissue:
22.3
ELOVL4
ENSSSCG00000028080
ENSG00000118402
ELOVL fatty acid elongase 4
Tissue enhanced
Detected in all
pineal gland:
35.1
retina:
59.9
EMCN
ENSSSCG00000038080
ENSG00000164035
Endomucin
Low tissue specificity
Detected in many
EME1
ENSSSCG00000017571
ENSG00000154920
Essential meiotic structure-specific endonuclease 1
Tissue enhanced
Detected in many
male glands:
10.8
testis:
20.6
EMILIN1
ENSSSCG00000008557
ENSG00000138080
Elastin microfibril interfacer 1
Tissue enhanced
Detected in many
lymphoid tissue:
49.3
smooth muscle:
48.5
EML1
ENSSSCG00000027667
ENSG00000066629
Echinoderm microtubule associated protein like 1
Low tissue specificity
Detected in all
EMP1
ENSSSCG00000036723
ENSG00000134531
Epithelial membrane protein 1
Tissue enhanced
Detected in many
cornea:
92.1
mouth:
75.9
ENDOD1
ENSSSCG00000014965
ENSG00000149218
Endonuclease domain containing 1
Tissue enhanced
Detected in many
brain:
36.4
ENDOU
ENSSSCG00000033142
ENSG00000111405
Endonuclease, poly(U) specific
Group enriched
Detected in many
mouth:
46.3
skin:
47.9
ENHO
ENSSSCG00000027428
ENSG00000168913
Adropin
Tissue enhanced
Detected in many
brain:
39.0
vagus nerve:
34.5
ENOX1
ENSSSCG00000021818
ENSG00000120658
Ecto-NOX disulfide-thiol exchanger 1
Tissue enhanced
Detected in many
cornea:
37.1
ENPP1
ENSSSCG00000004193
ENSG00000197594
Ectonucleotide pyrophosphatase/phosphodiesterase 1
Tissue enriched
Detected in many
cartilage:
130.3
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