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Keyword
Chromosome
1
2
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7
8
9
10
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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3143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ENPP2
ENSSSCG00000006001
ENSG00000136960
Ectonucleotide pyrophosphatase/phosphodiesterase 2
Tissue enriched
Detected in many
choroid plexus:
279.3
ENPP6
ENSSSCG00000015781
ENSG00000164303
Ectonucleotide pyrophosphatase/phosphodiesterase 6
Group enriched
Detected in many
brain:
28.3
dura mater:
19.9
gallbladder:
12.6
kidney:
23.9
lung:
41.1
EOMES
ENSSSCG00000040057
ENSG00000163508
Eomesodermin
Group enriched
Detected in many
brain:
27.8
lymphoid tissue:
24.1
EPAS1
ENSSSCG00000008443
ENSG00000116016
Endothelial PAS domain-containing protein 1
Low tissue specificity
Detected in many
EPB41L2
ENSSSCG00000004199
ENSG00000079819
Erythrocyte membrane protein band 4.1 like 2
Low tissue specificity
Detected in all
EPB41L3
ENSSSCG00000003687
ENSG00000082397
Erythrocyte membrane protein band 4.1 like 3
Tissue enhanced
Detected in all
kidney:
67.4
EPB41L5
ENSSSCG00000039185
ENSG00000115109
Erythrocyte membrane protein band 4.1 like 5
Tissue enhanced
Detected in all
thyroid gland:
55.0
EPCAM
ENSSSCG00000008429
ENSG00000119888
Epithelial cell adhesion molecule
Tissue enhanced
Detected in many
large intestine:
54.3
male glands:
76.4
EPHA4
ENSSSCG00000016230
ENSG00000116106
Ephrin type-A receptor 4 precursor
Tissue enhanced
Detected in many
brain:
38.2
EPHA5
ENSSSCG00000008919
ENSG00000145242
EPH receptor A5
Tissue enhanced
Detected in many
brain:
53.1
thyroid gland:
13.4
EPHB3
ENSSSCG00000026516
ENSG00000182580
EPH receptor B3
Tissue enhanced
Detected in all
male glands:
45.3
EPHB6
ENSSSCG00000016473
ENSG00000106123
EPH receptor B6
Tissue enhanced
Detected in many
lymphoid tissue:
43.6
male glands:
24.3
EPN2
ENSSSCG00000040457
ENSG00000072134
Epsin 2
Low tissue specificity
Detected in all
EPOP
ENSSSCG00000035677
ENSG00000273604
Elongin BC and polycomb repressive complex 2 associated protein
Tissue enhanced
Detected in many
cartilage:
17.5
testis:
19.9
EPOR
ENSSSCG00000013618
ENSG00000187266
Erythropoietin receptor
Tissue enhanced
Detected in many
brain:
9.0
lymphoid tissue:
10.8
EPPK1
ENSSSCG00000032203
ENSG00000261150
Epiplakin 1
Tissue enhanced
Detected in many
skin:
53.9
stomach:
50.8
EPS8L1
ENSSSCG00000026417
ENSG00000131037
EPS8 like 1
Tissue enhanced
Detected in many
mouth:
51.3
skin:
53.4
EPS8L2
ENSSSCG00000012848
ENSG00000177106
EPS8 like 2
Tissue enhanced
Detected in many
stomach:
77.6
ERBB2
ENSSSCG00000017497
ENSG00000141736
Receptor tyrosine-protein kinase erbB-2 precursor
Low tissue specificity
Detected in all
ERBB4
ENSSSCG00000016160
ENSG00000178568
Erb-b2 receptor tyrosine kinase 4
Tissue enhanced
Detected in many
brain:
23.5
heart:
35.7
ERC2
ENSSSCG00000024417
ENSG00000187672
ELKS/RAB6-interacting/CAST family member 2
Tissue enhanced
Detected in many
brain:
31.7
pituitary gland:
12.4
ERCC6L
ENSSSCG00000021834
ENSG00000186871
ERCC excision repair 6 like, spindle assembly checkpoint helicase
Tissue enhanced
Detected in many
lymphoid tissue:
10.2
testis:
9.3
ERFE
ENSSSCG00000016337
ENSG00000178752
Erythroferrone
Tissue enhanced
Detected in many
lymphoid tissue:
12.5
ERRFI1
ENSSSCG00000035774
ENSG00000116285
ERBB receptor feedback inhibitor 1
Tissue enhanced
Detected in all
cartilage:
241.4
liver:
92.9
synovial tissue:
95.5
ESCO2
ENSSSCG00000009670
ENSG00000171320
Establishment of sister chromatid cohesion N-acetyltransferase 2
Group enriched
Detected in many
lymphoid tissue:
10.9
testis:
37.1
ESPL1
ENSSSCG00000000265
ENSG00000135476
Extra spindle pole bodies like 1, separase
Tissue enhanced
Detected in many
lymphoid tissue:
12.6
testis:
25.7
ESRP2
ENSSSCG00000035227
ENSG00000103067
Epithelial splicing regulatory protein 2
Tissue enhanced
Detected in many
liver:
69.2
thyroid gland:
45.3
ESYT3
ENSSSCG00000027505
ENSG00000158220
Extended synaptotagmin 3
Tissue enhanced
Detected in many
skin:
39.5
ETNK2
ENSSSCG00000015276
ENSG00000143845
Ethanolamine kinase 2
Tissue enriched
Detected in many
liver:
106.4
ETNPPL
ENSSSCG00000009144
ENSG00000164089
Ethanolamine-phosphate phospho-lyase
Tissue enhanced
Detected in some
brain:
32.5
liver:
20.4
lymphoid tissue:
10.6
ETV1
ENSSSCG00000024591
ENSG00000006468
ETS variant 1
Tissue enhanced
Detected in many
brain:
74.2
pituitary gland:
52.5
salivary gland:
97.0
EVA1B
ENSSSCG00000033892
ENSG00000142694
Eva-1 homolog B
Tissue enhanced
Detected in many
cartilage:
51.6
EVC
ENSSSCG00000032637
ENSG00000072840
EvC ciliary complex subunit 1
Tissue enhanced
Detected in all
kidney:
55.2
EVPL
ENSSSCG00000017192
ENSG00000167880
Envoplakin
Tissue enhanced
Detected in many
cornea:
52.6
mouth:
25.1
stomach:
28.1
EXO1
ENSSSCG00000010865
ENSG00000174371
Exonuclease 1
Tissue enhanced
Detected in many
lymphoid tissue:
21.6
upper respiratory system:
13.0
EXOC3L1
ENSSSCG00000002788
ENSG00000179044
Exocyst complex component 3 like 1
Low tissue specificity
Detected in many
EYA1
ENSSSCG00000040728
ENSG00000104313
EYA transcriptional coactivator and phosphatase 1
Tissue enhanced
Detected in many
pituitary gland:
30.6
upper respiratory system:
37.1
EYA4
ENSSSCG00000034139
ENSG00000112319
EYA transcriptional coactivator and phosphatase 4
Tissue enhanced
Detected in many
pituitary gland:
18.8
skeletal muscle:
49.3
upper respiratory system:
19.9
EZH2
ENSSSCG00000028840
ENSG00000106462
Histone-lysine N-methyltransferase EZH2
Tissue enhanced
Detected in all
lymphoid tissue:
51.5
testis:
48.3
F11R
ENSSSCG00000006369
ENSG00000158769
Junctional adhesion molecule A precursor
Low tissue specificity
Detected in many
F13A1
ENSSSCG00000024310
ENSG00000124491
Coagulation factor XIII A chain
Tissue enhanced
Detected in many
skin:
36.9
upper respiratory system:
26.2
F5
ENSSSCG00000006289
ENSG00000198734
Coagulation factor V precursor
Tissue enhanced
Detected in many
brain:
29.6
liver:
63.5
salivary gland:
23.0
upper respiratory system:
23.6
FA2H
ENSSSCG00000002718
ENSG00000103089
Fatty acid 2-hydroxylase
Tissue enhanced
Detected in many
brain:
85.7
vagus nerve:
56.0
FAAH
ENSSSCG00000003901
ENSG00000117480
Fatty-acid amide hydrolase 1
Tissue enhanced
Detected in many
choroid plexus:
31.3
FABP4
ENSSSCG00000040681
ENSG00000170323
Fatty acid-binding protein, adipocyte
Tissue enhanced
Detected in many
adipose tissue:
239.6
aorta:
112.0
bone marrow:
191.5
FABP6
ENSSSCG00000017037
ENSG00000170231
Gastrotropin
Tissue enriched
Detected in some
small intestine:
511.8
FADS3
ENSSSCG00000013073
ENSG00000221968
Fatty acid desaturase 3
Tissue enhanced
Detected in many
lymphoid tissue:
79.8
FAH
ENSSSCG00000001780
ENSG00000103876
Fumarylacetoacetate hydrolase
Tissue enhanced
Detected in many
adrenal gland:
53.6
liver:
74.4
FAM102B
ENSSSCG00000006850
ENSG00000162636
Family with sequence similarity 102 member B
Low tissue specificity
Detected in many
FAM110B
ENSSSCG00000006240
ENSG00000169122
Family with sequence similarity 110 member B
Tissue enriched
Detected in many
cartilage:
120.4
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