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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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332 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PITX2
ENSSSCG00000034708
ENSG00000164093
Pituitary homeobox 2
Tissue enhanced
Detected in many
cornea:
16.8
large intestine:
18.7
mouth:
13.0
pituitary gland:
35.4
urinary bladder:
12.4
PLB1
ENSSSCG00000034756
ENSG00000163803
Phospholipase B1
Tissue enhanced
Detected in many
skin:
25.6
PLIN4
ENSSSCG00000013512
ENSG00000167676
Perilipin 4
Tissue enhanced
Detected in many
adipose tissue:
121.5
aorta:
63.1
bone marrow:
45.7
PLPPR4
ENSSSCG00000006875
ENSG00000117600
Phospholipid phosphatase related 4
Tissue enriched
Detected in some
brain:
62.7
PLPPR5
ENSSSCG00000006876
ENSG00000117598
Phospholipid phosphatase-related protein type 5
Group enriched
Detected in many
brain:
33.4
pituitary gland:
11.5
PPM1E
ENSSSCG00000038932
ENSG00000175175
Protein phosphatase, Mg2+/Mn2+ dependent 1E
Group enriched
Detected in many
brain:
38.4
heart:
30.1
pineal gland:
17.8
retina:
20.7
PPP1R3A
ENSSSCG00000016640
ENSG00000154415
Protein phosphatase 1 regulatory subunit 3A
Tissue enriched
Detected in some
skeletal muscle:
132.8
PRDM16
ENSSSCG00000021490
ENSG00000142611
PR/SET domain 16
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
PRELP
ENSSSCG00000015271
ENSG00000188783
Proline and arginine rich end leucine rich repeat protein
Tissue enriched
Detected in many
cartilage:
236.7
PRLR
ENSSSCG00000016830
ENSG00000113494
Prolactin receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
51.2
choroid plexus:
87.3
PROK2
ENSSSCG00000026200
ENSG00000163421
Prokineticin 2
Tissue enhanced
Detected in some
brain:
6.9
heart:
11.5
testis:
35.8
PRR15L
ENSSSCG00000024743
ENSG00000167183
Proline rich 15 like
Tissue enhanced
Detected in many
large intestine:
88.9
male glands:
109.6
PRTG
ENSSSCG00000035798
ENSG00000166450
Protogenin
Tissue enhanced
Detected in many
thyroid gland:
14.6
PTDSS1
ENSSSCG00000006089
ENSG00000156471
Phosphatidylserine synthase 1
Tissue enriched
Detected in all
heart:
138.5
PTGER3
ENSSSCG00000003788
ENSG00000050628
Prostaglandin E2 receptor EP3 subtype
Tissue enhanced
Detected in many
cervix:
28.4
heart:
41.4
kidney:
29.8
PTGS2
ENSSSCG00000015579
ENSG00000073756
Prostaglandin G/H synthase 2 precursor
Low tissue specificity
Detected in many
PTPN4
ENSSSCG00000015743
ENSG00000088179
Protein tyrosine phosphatase, non-receptor type 4
Tissue enhanced
Detected in all
brain:
34.1
skeletal muscle:
32.3
PTPRD
ENSSSCG00000005194
ENSG00000153707
Protein tyrosine phosphatase, receptor type D
Tissue enhanced
Detected in many
brain:
50.8
cartilage:
34.8
kidney:
38.0
PTPRO
ENSSSCG00000000601
ENSG00000151490
Protein tyrosine phosphatase, receptor type O
Tissue enriched
Detected in some
lens:
86.9
PTPRQ
ENSSSCG00000031716
ENSG00000139304
Protein tyrosine phosphatase, receptor type Q
Tissue enhanced
Detected in some
choroid plexus:
37.4
kidney:
21.3
mesothelial tissue:
74.0
RAB3B
ENSSSCG00000021036
ENSG00000169213
RAB3B, member RAS oncogene family
Group enriched
Detected in many
brain:
27.9
gallbladder:
16.1
pituitary gland:
40.4
stomach:
19.3
RABGAP1L
ENSSSCG00000015499
ENSG00000152061
RAB GTPase activating protein 1 like
Tissue enhanced
Detected in all
heart:
154.0
RERG
ENSSSCG00000000602
ENSG00000134533
RAS like estrogen regulated growth inhibitor
Tissue enhanced
Detected in many
adrenal gland:
59.8
cervix:
47.5
RFLNA
ENSSSCG00000035760
ENSG00000178882
Refilin A
Tissue enhanced
Detected in many
ovary:
45.6
stomach:
91.4
RGS6
ENSSSCG00000033093
ENSG00000182732
Regulator of G protein signaling 6
Tissue enhanced
Detected in many
brain:
18.1
heart:
15.1
male glands:
31.5
RHOD
ENSSSCG00000022726
ENSG00000173156
Ras homolog family member D
Tissue enhanced
Detected in many
cartilage:
34.1
RIPOR3
ENSSSCG00000007470
ENSG00000042062
RIPOR family member 3
Tissue enhanced
Detected in many
epididymis:
21.1
RNF208
ENSSSCG00000005858
ENSG00000212864
Ring finger protein 208
Tissue enriched
Detected in many
brain:
28.7
ROBO1
ENSSSCG00000012001
ENSG00000169855
Roundabout guidance receptor 1
Tissue enhanced
Detected in many
brain:
33.2
cartilage:
33.8
ovary:
33.1
RPGRIP1
ENSSSCG00000002129
ENSG00000092200
RPGR interacting protein 1
Group enriched
Detected in many
epididymis:
15.0
retina:
21.4
testis:
51.9
RPL3L
ENSSSCG00000032657
ENSG00000140986
Ribosomal protein L3 like
Tissue enhanced
Detected in some
heart:
48.9
skeletal muscle:
86.5
RSPO2
ENSSSCG00000006034
ENSG00000147655
R-spondin-2 precursor
Tissue enhanced
Detected in many
brain:
21.1
gallbladder:
17.4
synovial tissue:
11.3
upper respiratory system:
13.7
RXRG
ENSSSCG00000006328
ENSG00000143171
Retinoic acid receptor RXR-gamma
Tissue enhanced
Detected in all
brain:
29.0
pineal gland:
61.5
S100A1
ENSSSCG00000031053
ENSG00000160678
S100 calcium binding protein A1
Tissue enhanced
Detected in many
brain:
250.1
cartilage:
96.8
pineal gland:
70.9
SALL3
ENSSSCG00000004858
ENSG00000256463
Spalt like transcription factor 3
Tissue enhanced
Detected in some
brain:
14.0
heart:
12.0
male glands:
55.2
SCARA5
ENSSSCG00000009672
ENSG00000168079
Scavenger receptor class A member 5
Tissue enhanced
Detected in many
dura mater:
48.8
SCN3B
ENSSSCG00000024299
ENSG00000166257
Sodium voltage-gated channel beta subunit 3
Tissue enriched
Detected in some
brain:
78.9
SERPINE3
ENSSSCG00000009385
ENSG00000253309
Serpin family E member 3
Group enriched
Detected in some
adipose tissue:
46.5
gallbladder:
14.7
mesothelial tissue:
45.6
SFRP1
ENSSSCG00000025822
ENSG00000104332
Secreted frizzled related protein 1
Tissue enhanced
Detected in many
choroid plexus:
166.0
SH3GL2
ENSSSCG00000005177
ENSG00000107295
SH3 domain containing GRB2 like 2, endophilin A1
Tissue enhanced
Detected in many
brain:
55.7
pineal gland:
47.4
retina:
29.4
SH3TC2
ENSSSCG00000023279
ENSG00000169247
SH3 domain and tetratricopeptide repeats 2
Tissue enhanced
Detected in many
brain:
24.0
vagus nerve:
47.3
SHD
ENSSSCG00000013503
ENSG00000105251
Src homology 2 domain containing transforming protein D
Tissue enhanced
Detected in many
brain:
10.7
heart:
34.3
SKP2
ENSSSCG00000016835
ENSG00000145604
S-phase kinase-associated protein 2
Tissue enhanced
Detected in all
heart:
40.4
SLC16A7
ENSSSCG00000000456
ENSG00000118596
Solute carrier family 16 member 7
Tissue enhanced
Detected in many
heart:
60.6
SLC2A4
ENSSSCG00000023915
ENSG00000181856
Solute carrier family 2, facilitated glucose transporter member 4
Tissue enhanced
Detected in many
heart:
43.0
skeletal muscle:
81.6
SLC30A3
ENSSSCG00000021534
ENSG00000115194
Zinc transporter 3
Tissue enhanced
Detected in many
brain:
33.7
thyroid gland:
93.7
SLC41A1
ENSSSCG00000020783
ENSG00000133065
Solute carrier family 41 member 1
Tissue enhanced
Detected in all
choroid plexus:
49.1
heart:
105.7
male glands:
64.7
SLIT3
ENSSSCG00000017012
ENSG00000184347
Slit guidance ligand 3
Tissue enhanced
Detected in many
lens:
68.2
penis:
66.1
SLN
ENSSSCG00000029651
ENSG00000170290
Sarcolipin
Tissue enriched
Detected in some
skeletal muscle:
333.6
SMIM5
ENSSSCG00000038844
ENSG00000204323
Small integral membrane protein 5
Tissue enhanced
Detected in many
cartilage:
53.1
salivary gland:
28.4
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