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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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332 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SMOC2
ENSSSCG00000004013
ENSG00000112562
SPARC related modular calcium binding 2
Tissue enhanced
Detected in many
cervix:
64.8
ductus deferens:
56.4
endometrium:
41.5
SMYD2
ENSSSCG00000015583
ENSG00000143499
N-lysine methyltransferase SMYD2
Tissue enhanced
Detected in all
skeletal muscle:
37.1
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SPOCK3
ENSSSCG00000009722
ENSG00000196104
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3
Group enriched
Detected in some
brain:
32.3
pituitary gland:
47.7
retina:
17.7
thyroid gland:
37.7
SPSB4
ENSSSCG00000034369
ENSG00000175093
SplA/ryanodine receptor domain and SOCS box containing 4
Tissue enhanced
Detected in many
heart:
19.7
large intestine:
18.1
TBATA
ENSSSCG00000010273
ENSG00000166220
Thymus, brain and testes associated
Group enriched
Detected in some
lymphoid tissue:
73.6
testis:
79.9
TGM5
ENSSSCG00000004713
ENSG00000104055
Transglutaminase 5
Tissue enhanced
Detected in some
lens:
31.9
ovary:
20.4
THBS3
ENSSSCG00000006524
ENSG00000169231
Thrombospondin 3
Tissue enriched
Detected in many
cartilage:
68.7
THBS4
ENSSSCG00000014117
ENSG00000113296
Thrombospondin 4
Tissue enhanced
Detected in many
bone marrow:
79.3
cornea:
86.9
smooth muscle:
78.7
synovial tissue:
82.6
TMEM108
ENSSSCG00000011635
ENSG00000144868
Transmembrane protein 108
Tissue enhanced
Detected in many
choroid plexus:
21.1
lens:
17.7
pineal gland:
20.2
retina:
26.8
TMEM163
ENSSSCG00000015700
ENSG00000152128
Transmembrane protein 163
Tissue enhanced
Detected in many
brain:
21.8
heart:
8.5
lymphoid tissue:
9.7
TMEM229B
ENSSSCG00000023791
ENSG00000198133
Transmembrane protein 229B
Tissue enhanced
Detected in many
liver:
55.5
TMEM40
ENSSSCG00000011583
ENSG00000088726
Transmembrane protein 40
Tissue enriched
Detected in some
lens:
145.5
TMEM52B
ENSSSCG00000032431
ENSG00000165685
Transmembrane protein 52B
Group enriched
Detected in many
heart:
41.0
kidney:
48.6
retina:
19.4
TMEM61
ENSSSCG00000025097
ENSG00000143001
Transmembrane protein 61
Low tissue specificity
Detected in all
TNNI1
ENSSSCG00000024061
ENSG00000159173
Troponin I, slow skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
417.5
TRABD2B
ENSSSCG00000037318
ENSG00000269113
TraB domain containing 2B
Tissue enhanced
Detected in many
adipose tissue:
18.4
cartilage:
37.9
TRIM54
ENSSSCG00000039557
ENSG00000138100
Tripartite motif-containing protein 54
Tissue enhanced
Detected in some
heart:
47.1
mouth:
18.0
skeletal muscle:
59.9
TSPAN12
ENSSSCG00000016620
ENSG00000106025
Tetraspanin-12
Tissue enhanced
Detected in all
heart:
63.7
TUBA8
ENSSSCG00000000773
ENSG00000183785
Tubulin alpha 8
Tissue enhanced
Detected in all
skeletal muscle:
43.0
testis:
37.4
UCHL1
ENSSSCG00000022945
ENSG00000154277
Ubiquitin carboxyl-terminal hydrolase isozyme L1
Tissue enhanced
Detected in many
brain:
100.1
lens:
44.2
pineal gland:
29.0
pituitary gland:
33.0
UNC13A
ENSSSCG00000013880
ENSG00000130477
Unc-13 homolog A
Tissue enhanced
Detected in some
brain:
33.1
cornea:
9.0
pituitary gland:
12.7
retina:
12.2
UNC13C
ENSSSCG00000004614
ENSG00000137766
Unc-13 homolog C
Tissue enriched
Detected in many
brain:
98.8
UNC5C
ENSSSCG00000021874
ENSG00000182168
Unc-5 netrin receptor C
Tissue enhanced
Detected in many
brain:
24.2
cornea:
34.2
UNC5D
ENSSSCG00000015830
ENSG00000156687
Unc-5 netrin receptor D
Tissue enhanced
Detected in many
brain:
18.0
kidney:
15.8
UPK1B
ENSSSCG00000011904
ENSG00000114638
Uroplakin-1b
Group enriched
Detected in many
adipose tissue:
31.5
cornea:
72.4
mesothelial tissue:
47.5
urinary bladder:
44.3
VCAN
ENSSSCG00000014136
ENSG00000038427
Versican core protein precursor
Tissue enhanced
Detected in all
ovary:
100.4
VWA7
ENSSSCG00000036796
ENSG00000204396
Von Willebrand factor A domain-containing protein 7 precursor
Tissue enhanced
Detected in many
thyroid gland:
23.3
WFIKKN2
ENSSSCG00000017557
ENSG00000173714
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
Tissue enriched
Detected in some
choroid plexus:
161.4
XYLT1
ENSSSCG00000007872
ENSG00000103489
Xylosyltransferase 1
Tissue enriched
Detected in many
cartilage:
92.2
ZMYND15
ENSSSCG00000017921
ENSG00000141497
Zinc finger MYND-type containing 15
Group enriched
Detected in many
adipose tissue:
15.1
mesothelial tissue:
56.3
testis:
28.6
ZNF385B
ENSSSCG00000023181
ENSG00000144331
Zinc finger protein 385B
Tissue enhanced
Detected in all
cartilage:
105.1
male glands:
62.9
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