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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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332 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MATN4
ENSSSCG00000007391
ENSG00000124159
Matrilin 4
Tissue enhanced
Detected in many
heart:
27.1
mesothelial tissue:
28.6
MC4R
ENSSSCG00000004904
ENSG00000166603
Melanocortin receptor 4
Group enriched
Detected in some
brain:
17.5
epididymis:
7.4
heart:
8.0
MEGF6
ENSSSCG00000024678
ENSG00000162591
Multiple EGF like domains 6
Tissue enhanced
Detected in many
mesothelial tissue:
34.2
MGP
ENSSSCG00000037697
ENSG00000111341
Matrix Gla protein
Tissue enhanced
Detected in many
aorta:
118.7
dura mater:
144.7
mesothelial tissue:
126.3
MKX
ENSSSCG00000029783
ENSG00000150051
Mohawk homeobox
Tissue enhanced
Detected in many
cartilage:
33.3
penis:
37.4
MME
ENSSSCG00000011723
ENSG00000196549
Membrane metalloendopeptidase
Tissue enhanced
Detected in many
choroid plexus:
43.9
endometrium:
40.3
kidney:
60.8
ovary:
39.6
MUC6
ENSSSCG00000012835
ENSG00000184956
Mucin 6, oligomeric mucus/gel-forming
Tissue enriched
Detected in some
small intestine:
996.3
MYH2
ENSSSCG00000029441
ENSG00000125414
Myosin-2
Tissue enriched
Detected in some
skeletal muscle:
505.3
MYH3
ENSSSCG00000018007
ENSG00000109063
Myosin heavy chain 3
Tissue enriched
Detected in many
male glands:
85.8
MYH4
ENSSSCG00000018003
ENSG00000264424
Myosin-4
Tissue enriched
Detected in some
skeletal muscle:
262.5
MYH8
ENSSSCG00000018005
ENSG00000133020
Myosin heavy chain 8
Group enriched
Detected in some
male glands:
66.3
mouth:
23.3
MYL2
ENSSSCG00000039710
ENSG00000111245
Myosin regulatory light chain 2, ventricular/cardiac muscle isoform
Group enriched
Detected in some
heart:
241.0
skeletal muscle:
174.8
MYL3
ENSSSCG00000011325
ENSG00000160808
Myosin light chain 3
Group enriched
Detected in some
heart:
596.1
skeletal muscle:
418.9
MYL4
ENSSSCG00000017307
ENSG00000198336
Myosin light chain 4
Tissue enriched
Detected in some
heart:
466.8
MYOT
ENSSSCG00000014324
ENSG00000120729
Myotilin
Tissue enriched
Detected in some
skeletal muscle:
267.8
MYRF
ENSSSCG00000013078
ENSG00000124920
Myelin regulatory factor
Group enriched
Detected in many
adipose tissue:
28.3
brain:
62.5
gallbladder:
23.3
mesothelial tissue:
37.1
stomach:
55.6
na
ENSSSCG00000001500
ENSG00000124749
Tissue enhanced
Detected in many
ductus deferens:
35.8
penis:
26.8
na
ENSSSCG00000003011
Tissue enriched
Detected in some
large intestine:
181.3
na
ENSSSCG00000003043
Tissue enriched
Detected in some
testis:
43.2
na
ENSSSCG00000003045
ENSG00000105409
Sodium/potassium-transporting ATPase subunit alpha-3
Group enriched
Detected in some
brain:
82.1
pineal gland:
64.1
retina:
91.4
na
ENSSSCG00000005430
Group enriched
Detected in some
heart:
13.4
lens:
13.2
na
ENSSSCG00000007135
ENSG00000101004
Tissue enhanced
Detected in many
cartilage:
37.1
kidney:
24.5
mesothelial tissue:
34.5
na
ENSSSCG00000008954
Tissue enhanced
Detected in many
cartilage:
86.3
liver:
86.3
na
ENSSSCG00000009200
Tissue enhanced
Detected in many
brain:
82.7
thyroid gland:
26.4
na
ENSSSCG00000011850
ENSG00000145113
Mucin-4 precursor
Tissue enriched
Detected in many
upper respiratory system:
155.9
na
ENSSSCG00000012049
ENSG00000180509,ENSG00000276289
Group enriched
Detected in many
ductus deferens:
18.2
heart:
53.0
ovary:
16.4
small intestine:
35.1
na
ENSSSCG00000012832
ENSG00000101825
Tissue enhanced
Detected in many
cartilage:
89.1
na
ENSSSCG00000012895
Group enriched
Detected in many
brain:
43.1
heart:
42.7
na
ENSSSCG00000013714
ENSG00000181143
Tissue enhanced
Detected in many
esophagus:
68.7
fallopian tube:
25.2
mesothelial tissue:
48.7
upper respiratory system:
34.2
na
ENSSSCG00000014004
ENSG00000141934
Phospholipid phosphatase 2
Tissue enhanced
Detected in many
male glands:
42.1
na
ENSSSCG00000014233
ENSG00000250803
Tissue enriched
Detected in some
testis:
85.3
na
ENSSSCG00000014272
ENSG00000164398
Tissue enhanced
Detected in some
adrenal gland:
27.7
brain:
29.9
pineal gland:
21.0
retina:
22.8
testis:
23.3
na
ENSSSCG00000015839
ENSG00000157168
Tissue enhanced
Detected in many
skin:
58.7
na
ENSSSCG00000016161
Tissue enhanced
Detected in some
brain:
5.1
heart:
11.5
na
ENSSSCG00000016401
Tissue enhanced
Detected in many
brain:
52.0
lens:
49.6
vagus nerve:
41.2
na
ENSSSCG00000016493
ENSG00000261115
Tissue enhanced
Detected in many
brain:
32.9
na
ENSSSCG00000020909
Tissue enhanced
Detected in many
small intestine:
18.6
na
ENSSSCG00000022876
Tissue enhanced
Detected in many
fallopian tube:
13.9
heart:
8.2
lung:
13.6
upper respiratory system:
7.0
na
ENSSSCG00000023192
Tissue enhanced
Detected in many
choroid plexus:
49.6
kidney:
32.6
retina:
18.8
na
ENSSSCG00000023332
Group enriched
Detected in some
brain:
78.0
pineal gland:
38.2
retina:
41.8
na
ENSSSCG00000023479
Tissue enhanced
Detected in many
cornea:
37.9
na
ENSSSCG00000023746
ENSG00000168702
Tissue enhanced
Detected in many
brain:
20.9
cervix:
13.3
pineal gland:
16.7
na
ENSSSCG00000024796
ENSG00000243566
Group enriched
Detected in many
adipose tissue:
59.8
mesothelial tissue:
180.8
na
ENSSSCG00000028695
Tissue enhanced
Detected in many
bone marrow:
19.4
brain:
34.4
lymphoid tissue:
24.5
pineal gland:
26.4
na
ENSSSCG00000028892
ENSG00000214193
Tissue enriched
Detected in many
testis:
82.3
na
ENSSSCG00000028942
ENSG00000021645
Group enriched
Detected in some
brain:
49.7
pineal gland:
30.6
retina:
25.8
na
ENSSSCG00000029160
ENSG00000204388,ENSG00000204389
Tissue enhanced
Detected in all
male glands:
194.8
na
ENSSSCG00000029866
ENSG00000164221
Tissue enhanced
Detected in many
heart:
28.5
na
ENSSSCG00000031417
Tissue enhanced
Detected in many
fallopian tube:
28.1
na
ENSSSCG00000031450
ENSG00000103150
Low tissue specificity
Detected in all
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