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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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332 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GREB1L
ENSSSCG00000003699
ENSG00000141449
Growth regulation by estrogen in breast cancer 1 like
Tissue enhanced
Detected in many
ductus deferens:
37.3
epididymis:
62.0
GRIA4
ENSSSCG00000030565
ENSG00000152578
Glutamate ionotropic receptor AMPA type subunit 4
Tissue enhanced
Detected in many
brain:
46.4
epididymis:
33.5
retina:
20.2
GRIK1
ENSSSCG00000025119
ENSG00000171189
Glutamate ionotropic receptor kainate type subunit 1
Tissue enhanced
Detected in some
choroid plexus:
62.6
pineal gland:
14.6
retina:
21.9
GRIP1
ENSSSCG00000000478
ENSG00000155974
Glutamate receptor interacting protein 1
Low tissue specificity
Detected in many
GSN
ENSSSCG00000037508
ENSG00000148180
Gelsolin
Tissue enhanced
Detected in all
cartilage:
266.2
heart:
223.1
penis:
327.1
GYG2
ENSSSCG00000038044
ENSG00000056998
Glycogenin 2
Tissue enhanced
Detected in all
adipose tissue:
35.3
HAND1
ENSSSCG00000031080
ENSG00000113196
Heart- and neural crest derivatives-expressed protein 1
Tissue enhanced
Detected in some
heart:
10.2
small intestine:
11.4
smooth muscle:
46.6
urinary bladder:
19.1
HCN4
ENSSSCG00000001920
ENSG00000138622
Hyperpolarization activated cyclic nucleotide gated potassium channel 4
Tissue enhanced
Detected in many
brain:
20.0
heart:
20.2
HEY2
ENSSSCG00000004223
ENSG00000135547
Hairy/enhancer-of-split related with YRPW motif protein 2
Tissue enhanced
Detected in many
heart:
20.6
penis:
24.7
HMCN2
ENSSSCG00000005699
ENSG00000148357
Hemicentin 2
Tissue enhanced
Detected in many
cervix:
35.8
skeletal muscle:
30.9
HOXA4
ENSSSCG00000016704
ENSG00000197576
Homeobox A4
Tissue enhanced
Detected in many
male glands:
28.6
HSPB6
ENSSSCG00000023498
ENSG00000004776
Heat shock protein family B (small) member 6
Tissue enhanced
Detected in many
skeletal muscle:
207.1
smooth muscle:
238.3
HSPH1
ENSSSCG00000009334
ENSG00000120694
Heat shock protein 105 kDa
Tissue enhanced
Detected in all
brain:
54.3
IKZF2
ENSSSCG00000016164
ENSG00000030419
IKAROS family zinc finger 2
Tissue enhanced
Detected in many
lymphoid tissue:
50.2
IL25
ENSSSCG00000028427
ENSG00000166090
Interleukin 25
Tissue enhanced
Detected in many
breast:
16.9
heart:
19.1
IL2RB
ENSSSCG00000029668
ENSG00000100385
Interleukin 2 receptor subunit beta
Tissue enhanced
Detected in many
lymphoid tissue:
37.9
stomach:
44.7
ILDR2
ENSSSCG00000035124
ENSG00000143195
Immunoglobulin like domain containing receptor 2
Tissue enhanced
Detected in many
liver:
19.0
INHA
ENSSSCG00000020771
ENSG00000123999
Inhibin alpha chain
Tissue enriched
Detected in some
ovary:
76.2
INHBA
ENSSSCG00000035077
ENSG00000122641
Inhibin beta A chain
Group enriched
Detected in many
cartilage:
119.6
ovary:
55.3
IRX3
ENSSSCG00000002831
ENSG00000177508
Iroquois homeobox 3
Tissue enhanced
Detected in many
breast:
24.6
male glands:
63.3
IRX4
ENSSSCG00000017112
ENSG00000113430
Iroquois homeobox 4
Tissue enhanced
Detected in some
breast:
9.3
heart:
23.8
mouth:
7.5
skin:
17.5
IRX5
ENSSSCG00000032145
ENSG00000176842
Iroquois homeobox 5
Tissue enhanced
Detected in many
breast:
32.9
male glands:
51.4
IRX6
ENSSSCG00000002830
ENSG00000159387
Iroquois homeobox 6
Group enriched
Detected in some
brain:
12.4
heart:
9.6
kidney:
5.1
retina:
9.1
ISLR2
ENSSSCG00000036011
ENSG00000167178
Immunoglobulin superfamily containing leucine rich repeat 2
Tissue enhanced
Detected in many
brain:
18.8
mesothelial tissue:
13.3
vagus nerve:
15.9
ITGAE
ENSSSCG00000017869
ENSG00000083457
Integrin subunit alpha E
Tissue enhanced
Detected in many
lens:
57.9
lymphoid tissue:
25.9
ITGB6
ENSSSCG00000015886
ENSG00000115221
Integrin beta-6 precursor
Tissue enhanced
Detected in many
epididymis:
22.6
heart:
30.6
skeletal muscle:
26.4
JUNB
ENSSSCG00000013735
ENSG00000171223
JunB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
synovial tissue:
110.7
KBTBD12
ENSSSCG00000011622
ENSG00000187715
Kelch repeat and BTB domain containing 12
Tissue enhanced
Detected in many
heart:
27.0
skeletal muscle:
24.2
KCNIP2
ENSSSCG00000010570
ENSG00000120049
Potassium voltage-gated channel interacting protein 2
Group enriched
Detected in many
brain:
34.9
heart:
89.5
KCNJ18
ENSSSCG00000034773
ENSG00000260458
Potassium voltage-gated channel subfamily J member 18
Group enriched
Detected in many
brain:
21.1
lens:
77.9
skeletal muscle:
30.3
KCNJ2
ENSSSCG00000039947
ENSG00000123700
Inward rectifier potassium channel 2
Tissue enhanced
Detected in many
dura mater:
39.5
heart:
56.6
skeletal muscle:
29.9
KCNJ4
ENSSSCG00000000106
ENSG00000168135
Potassium voltage-gated channel subfamily J member 4
Group enriched
Detected in some
brain:
26.1
heart:
79.9
KCNK3
ENSSSCG00000008563
ENSG00000171303
Potassium channel subfamily K member 3
Tissue enhanced
Detected in many
adrenal gland:
54.5
heart:
37.5
ovary:
19.6
KERA
ENSSSCG00000000917
ENSG00000139330
Keratocan
Tissue enriched
Detected in many
cornea:
288.6
KIAA1211
ENSSSCG00000008903
ENSG00000109265
KIAA1211
Tissue enriched
Detected in many
epididymis:
89.8
KIAA1211L
ENSSSCG00000008187
ENSG00000196872
KIAA1211 like
Tissue enhanced
Detected in many
brain:
34.1
lymphoid tissue:
26.4
KIF26B
ENSSSCG00000010879
ENSG00000162849
Kinesin family member 26B
Tissue enhanced
Detected in many
heart:
31.5
kidney:
19.4
KRT14
ENSSSCG00000017448
ENSG00000186847
Keratin 14
Tissue enhanced
Detected in many
large intestine:
131.5
mouth:
166.7
skin:
199.4
KRT80
ENSSSCG00000040636
ENSG00000167767
Keratin 80
Tissue enhanced
Detected in all
salivary gland:
44.8
KY
ENSSSCG00000011646
ENSG00000174611
Kyphoscoliosis peptidase
Group enriched
Detected in some
male glands:
27.5
mouth:
14.8
skeletal muscle:
40.0
LGR5
ENSSSCG00000030511
ENSG00000139292
Leucine-rich repeat-containing G-protein coupled receptor 5 precursor
Tissue enhanced
Detected in many
skin:
34.4
LRRC17
ENSSSCG00000036452
ENSG00000128606
Leucine rich repeat containing 17
Tissue enhanced
Detected in many
heart:
29.1
male glands:
28.8
synovial tissue:
26.6
LRRC39
ENSSSCG00000006867
ENSG00000122477
Leucine rich repeat containing 39
Tissue enriched
Detected in many
lens:
138.1
LRRC4B
ENSSSCG00000029960
ENSG00000131409
Leucine rich repeat containing 4B
Group enriched
Detected in many
brain:
30.6
heart:
19.4
LRRN2
ENSSSCG00000015285
ENSG00000170382
Leucine rich repeat neuronal 2
Group enriched
Detected in many
brain:
22.8
choroid plexus:
12.8
LTBP2
ENSSSCG00000002368
ENSG00000119681
Latent transforming growth factor beta binding protein 2
Tissue enhanced
Detected in many
mesothelial tissue:
67.7
LYPD4
ENSSSCG00000003044
ENSG00000273111
Ly6/PLAUR domain-containing protein 4 precursor
Tissue enriched
Detected in some
testis:
84.3
LYPD6
ENSSSCG00000023627
ENSG00000187123
LY6/PLAUR domain containing 6
Tissue enhanced
Detected in many
lens:
42.4
penis:
30.9
MACROD1
ENSSSCG00000013043
ENSG00000133315
O-acetyl-ADP-ribose deacetylase MACROD1
Group enriched
Detected in many
heart:
46.2
skeletal muscle:
149.0
MAP3K5
ENSSSCG00000026041
ENSG00000197442
Mitogen-activated protein kinase kinase kinase 5
Low tissue specificity
Detected in all
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