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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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332 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
COL12A1
ENSSSCG00000004484
ENSG00000111799
Collagen type XII alpha 1 chain
Tissue enhanced
Detected in many
cartilage:
157.9
COL13A1
ENSSSCG00000010256
ENSG00000197467
Collagen type XIII alpha 1 chain
Tissue enhanced
Detected in many
cervix:
36.3
COLGALT2
ENSSSCG00000030217
ENSG00000198756
Collagen beta(1-O)galactosyltransferase 2
Tissue enhanced
Detected in many
cartilage:
67.3
cornea:
37.8
COMP
ENSSSCG00000013916
ENSG00000105664
Cartilage oligomeric matrix protein
Tissue enriched
Detected in some
cartilage:
691.8
COX6B2
ENSSSCG00000035612
ENSG00000160471
Cytochrome c oxidase subunit 6B2
Tissue enriched
Detected in some
testis:
128.8
CPNE5
ENSSSCG00000001567
ENSG00000124772
Copine 5
Tissue enriched
Detected in some
brain:
65.8
CRABP1
ENSSSCG00000021873
ENSG00000166426
Cellular retinoic acid-binding protein 1
Tissue enriched
Detected in many
pineal gland:
321.9
CRYM
ENSSSCG00000007849
ENSG00000103316
Crystallin mu
Tissue enhanced
Detected in many
brain:
56.3
male glands:
91.5
pituitary gland:
88.5
CST6
ENSSSCG00000012960
ENSG00000175315
Cystatin E/M
Tissue enhanced
Detected in many
epididymis:
96.1
male glands:
81.3
skin:
99.4
CTGF
ENSSSCG00000004192
ENSG00000118523
Connective tissue growth factor
Tissue enriched
Detected in many
cartilage:
384.2
CYB5R1
ENSSSCG00000010929
ENSG00000159348
Cytochrome b5 reductase 1
Tissue enhanced
Detected in all
heart:
24.6
skeletal muscle:
41.5
CYP1B1
ENSSSCG00000033844
ENSG00000138061
Cytochrome P450 family 1 subfamily B member 1
Tissue enhanced
Detected in many
dura mater:
50.8
ovary:
77.7
DAPL1
ENSSSCG00000015879
ENSG00000163331
Death-associated protein-like 1
Group enriched
Detected in some
cornea:
129.1
lens:
209.3
DGKB
ENSSSCG00000015355
ENSG00000136267
Diacylglycerol kinase beta
Tissue enhanced
Detected in many
brain:
68.3
salivary gland:
33.9
DHRS4
ENSSSCG00000002013
ENSG00000157326,ENSG00000187630
Dehydrogenase/reductase SDR family member 4
Tissue enriched
Detected in many
testis:
279.6
DKK3
ENSSSCG00000013401
ENSG00000050165
Dickkopf-related protein 3 precursor
Tissue enhanced
Detected in many
heart:
96.2
ovary:
101.1
DNAJB1
ENSSSCG00000013784
ENSG00000132002
DnaJ homolog subfamily B member 1
Low tissue specificity
Detected in all
DYNC1I1
ENSSSCG00000015335
ENSG00000158560
Dynein cytoplasmic 1 intermediate chain 1
Group enriched
Detected in many
brain:
30.5
lens:
119.7
ECI1
ENSSSCG00000034338
ENSG00000167969
Enoyl-CoA delta isomerase 1, mitochondrial
Tissue enhanced
Detected in all
liver:
96.2
EFS
ENSSSCG00000002026
ENSG00000100842
Embryonal Fyn-associated substrate
Low tissue specificity
Detected in many
EGLN3
ENSSSCG00000001963
ENSG00000129521
Egl-9 family hypoxia inducible factor 3
Tissue enhanced
Detected in many
lens:
59.1
EGR3
ENSSSCG00000009630
ENSG00000179388
Early growth response 3
Tissue enhanced
Detected in many
synovial tissue:
55.2
ELN
ENSSSCG00000025858
ENSG00000049540
Elastin precursor
Tissue enriched
Detected in many
cartilage:
455.5
EPHA4
ENSSSCG00000016230
ENSG00000116106
Ephrin type-A receptor 4 precursor
Tissue enhanced
Detected in many
brain:
38.2
EPPK1
ENSSSCG00000032203
ENSG00000261150
Epiplakin 1
Tissue enhanced
Detected in many
skin:
53.9
stomach:
50.8
EPS8L2
ENSSSCG00000012848
ENSG00000177106
EPS8 like 2
Tissue enhanced
Detected in many
stomach:
77.6
ESYT3
ENSSSCG00000027505
ENSG00000158220
Extended synaptotagmin 3
Tissue enhanced
Detected in many
skin:
39.5
EXTL1
ENSSSCG00000029558
ENSG00000158008
Exostosin like glycosyltransferase 1
Group enriched
Detected in many
cartilage:
76.1
liver:
72.3
FABP3
ENSSSCG00000036883
ENSG00000121769
Fatty acid-binding protein, heart
Tissue enhanced
Detected in many
heart:
63.9
skeletal muscle:
53.6
FABP4
ENSSSCG00000040681
ENSG00000170323
Fatty acid-binding protein, adipocyte
Tissue enhanced
Detected in many
adipose tissue:
239.6
aorta:
112.0
bone marrow:
191.5
FAM198A
ENSSSCG00000011294
ENSG00000144649
Family with sequence similarity 198 member A
Tissue enhanced
Detected in many
dura mater:
40.3
FBN2
ENSSSCG00000014256
ENSG00000138829
Fibrillin 2
Tissue enhanced
Detected in many
cartilage:
18.2
ductus deferens:
24.9
pituitary gland:
20.0
FGF13
ENSSSCG00000022331
ENSG00000129682
Fibroblast growth factor 13
Tissue enhanced
Detected in many
brain:
47.1
FITM2
ENSSSCG00000037912
ENSG00000197296
Fat storage-inducing transmembrane protein 2
Tissue enhanced
Detected in all
heart:
48.4
FLVCR2
ENSSSCG00000021606
ENSG00000119686
Feline leukemia virus subgroup C receptor-related protein 2
Tissue enhanced
Detected in many
liver:
25.8
lung:
43.1
FMOD
ENSSSCG00000015270
ENSG00000122176
Fibromodulin
Tissue enriched
Detected in many
cartilage:
254.1
FOS
ENSSSCG00000002383
ENSG00000170345
Proto-oncogene c-Fos
Tissue enhanced
Detected in many
aorta:
123.9
synovial tissue:
121.3
FOXC2
ENSSSCG00000029296
ENSG00000176692
Forkhead box C2
Tissue enhanced
Detected in many
cartilage:
61.3
penis:
46.1
vagus nerve:
63.1
FRAS1
ENSSSCG00000008991
ENSG00000138759
Fraser extracellular matrix complex subunit 1
Tissue enhanced
Detected in many
heart:
40.1
GABRA4
ENSSSCG00000030515
ENSG00000109158
Gamma-aminobutyric acid type A receptor alpha4 subunit
Tissue enriched
Detected in some
brain:
34.0
GATA5
ENSSSCG00000007538
ENSG00000130700
GATA binding protein 5
Tissue enhanced
Detected in many
adipose tissue:
32.2
mesothelial tissue:
60.4
small intestine:
29.7
stomach:
45.3
GCK
ENSSSCG00000016751
ENSG00000106633
Myosin regulatory light chain 2, atrial isoform
Tissue enriched
Detected in some
heart:
414.0
GLP1R
ENSSSCG00000001589
ENSG00000112164
Glucagon-like peptide 1 receptor precursor
Tissue enriched
Detected in many
small intestine:
35.0
GNG8
ENSSSCG00000022068
ENSG00000167414
G protein subunit gamma 8
Tissue enhanced
Detected in many
brain:
65.1
GPD1L
ENSSSCG00000021977
ENSG00000152642
Glycerol-3-phosphate dehydrogenase 1 like
Tissue enhanced
Detected in all
male glands:
70.5
GPM6A
ENSSSCG00000023328
ENSG00000150625
Glycoprotein M6A
Tissue enhanced
Detected in some
brain:
77.2
choroid plexus:
23.5
pineal gland:
19.0
GPR52
ENSSSCG00000040789
ENSG00000203737
G protein-coupled receptor 52
Tissue enhanced
Detected in many
brain:
24.7
heart:
39.7
GPX3
ENSSSCG00000036438
ENSG00000211445
Glutathione peroxidase 3 precursor
Group enriched
Detected in many
kidney:
521.1
ovary:
496.9
GRAP2
ENSSSCG00000000080
ENSG00000100351
GRB2-related adaptor protein 2
Tissue enhanced
Detected in all
lymphoid tissue:
44.2
GREB1
ENSSSCG00000025483
ENSG00000196208
Growth regulation by estrogen in breast cancer 1
Tissue enhanced
Detected in many
epididymis:
21.3
ovary:
20.1
penis:
28.8
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