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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FOXP4
ENSSSCG00000001619
ENSG00000137166
Forkhead box P4
Tissue enhanced
Detected in all
stomach:
61.9
FOXS1
ENSSSCG00000033613
ENSG00000179772
Forkhead box S1
Low tissue specificity
Detected in all
FRMD4A
ENSSSCG00000011056
ENSG00000151474
FERM domain containing 4A
Low tissue specificity
Detected in all
FSCN1
ENSSSCG00000007586
ENSG00000075618
Fascin
Tissue enhanced
Detected in many
brain:
55.1
FZD2
ENSSSCG00000029838
ENSG00000180340
Frizzled-2 precursor
Tissue enhanced
Detected in many
vagus nerve:
45.7
FZD4
ENSSSCG00000014920
ENSG00000174804
Frizzled class receptor 4
Tissue enhanced
Detected in all
adipose tissue:
65.0
FZD6
ENSSSCG00000006052
ENSG00000164930
Frizzled-6 precursor
Low tissue specificity
Detected in all
FZD7
ENSSSCG00000016111
ENSG00000155760
Frizzled class receptor 7
Tissue enhanced
Detected in all
choroid plexus:
52.3
FZD8
ENSSSCG00000033001
ENSG00000177283
Frizzled class receptor 8
Tissue enhanced
Detected in many
cartilage:
88.3
FZD9
ENSSSCG00000023004
ENSG00000188763
Frizzled class receptor 9
Group enriched
Detected in many
cartilage:
34.9
choroid plexus:
18.2
testis:
9.9
GADD45B
ENSSSCG00000022689
ENSG00000099860
Growth arrest and DNA damage inducible beta
Low tissue specificity
Detected in all
GAL3ST1
ENSSSCG00000010009
ENSG00000128242
Galactosylceramide sulfotransferase
Tissue enhanced
Detected in many
brain:
27.1
kidney:
20.4
vagus nerve:
23.2
GAL3ST4
ENSSSCG00000007648
ENSG00000197093
Galactose-3-O-sulfotransferase 4
Low tissue specificity
Detected in all
GALNT18
ENSSSCG00000013403
ENSG00000110328
Polypeptide N-acetylgalactosaminyltransferase 18
Tissue enriched
Detected in many
cartilage:
84.5
GAREM1
ENSSSCG00000003731
ENSG00000141441
GRB2 associated regulator of MAPK1 subtype 1
Tissue enhanced
Detected in all
cartilage:
48.6
GAS1
ENSSSCG00000033321
ENSG00000180447
Growth arrest specific 1
Tissue enhanced
Detected in many
cartilage:
79.4
mesothelial tissue:
89.8
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GBE1
ENSSSCG00000012000
ENSG00000114480
1,4-alpha-glucan branching enzyme 1
Tissue enhanced
Detected in all
cartilage:
61.9
GCNT1
ENSSSCG00000005277
ENSG00000187210
Glucosaminyl (N-acetyl) transferase 1, core 2
Tissue enhanced
Detected in many
male glands:
50.9
GDF5
ENSSSCG00000023261
ENSG00000125965
Growth/differentiation factor 5 precursor
Tissue enriched
Detected in some
cartilage:
61.3
GEM
ENSSSCG00000006105
ENSG00000164949
GTP binding protein overexpressed in skeletal muscle
Tissue enhanced
Detected in many
cartilage:
62.6
GEMIN5
ENSSSCG00000017066
ENSG00000082516
Gem nuclear organelle associated protein 5
Tissue enhanced
Detected in all
cartilage:
52.0
GFAP
ENSSSCG00000017343
ENSG00000131095
Glial fibrillary acidic protein
Group enriched
Detected in some
brain:
423.1
pineal gland:
126.7
GFPT2
ENSSSCG00000014012
ENSG00000131459
Glutamine-fructose-6-phosphate transaminase 2
Tissue enhanced
Detected in many
cartilage:
41.9
ovary:
57.7
synovial tissue:
75.8
GFRA3
ENSSSCG00000014328
ENSG00000146013
GDNF family receptor alpha 3
Tissue enhanced
Detected in many
adipose tissue:
31.5
brain:
27.3
small intestine:
32.3
vagus nerve:
24.9
GGT5
ENSSSCG00000010055
ENSG00000099998
Gamma-glutamyltransferase 5
Low tissue specificity
Detected in all
GJA4
ENSSSCG00000039983
ENSG00000187513
Gap junction alpha-4 protein
Tissue enhanced
Detected in many
aorta:
31.8
mesothelial tissue:
39.2
GJA5
ENSSSCG00000006696
ENSG00000265107
Gap junction protein alpha 5
Low tissue specificity
Detected in many
GJB3
ENSSSCG00000038677
ENSG00000188910
Gap junction protein beta 3
Tissue enhanced
Detected in many
cornea:
19.2
male glands:
29.8
upper respiratory system:
19.2
GJC3
ENSSSCG00000007636
ENSG00000176402
Gap junction protein gamma 3
Tissue enriched
Detected in many
vagus nerve:
83.7
GLCCI1
ENSSSCG00000015345
ENSG00000106415
Glucocorticoid induced 1
Tissue enhanced
Detected in all
lymphoid tissue:
47.4
GLI2
ENSSSCG00000015733
ENSG00000074047
Zinc finger protein GLI2
Tissue enhanced
Detected in many
cartilage:
43.7
GLI3
ENSSSCG00000016763
ENSG00000106571
GLI family zinc finger 3
Tissue enhanced
Detected in many
cartilage:
79.1
GMFG
ENSSSCG00000040981
ENSG00000130755
Glia maturation factor gamma
Tissue enhanced
Detected in many
lymphoid tissue:
75.4
GNAZ
ENSSSCG00000010046
ENSG00000128266
G protein subunit alpha z
Tissue enhanced
Detected in many
brain:
36.7
retina:
20.1
GNE
ENSSSCG00000037468
ENSG00000159921
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase
Tissue enriched
Detected in all
male glands:
122.3
GNG2
ENSSSCG00000028092
ENSG00000186469
G protein subunit gamma 2
Tissue enhanced
Detected in many
brain:
49.6
male glands:
43.2
GPC3
ENSSSCG00000012680
ENSG00000147257
Glypican 3
Tissue enhanced
Detected in many
cornea:
55.3
liver:
32.8
GPR146
ENSSSCG00000032156
ENSG00000164849
G protein-coupled receptor 146
Low tissue specificity
Detected in all
GPR17
ENSSSCG00000040850
ENSG00000144230
G protein-coupled receptor 17
Tissue enhanced
Detected in all
brain:
22.1
GPR4
ENSSSCG00000037184
ENSG00000177464
G-protein coupled receptor 4
Tissue enhanced
Detected in many
mesothelial tissue:
38.0
GPRC5A
ENSSSCG00000029592
ENSG00000013588
G protein-coupled receptor class C group 5 member A
Tissue enhanced
Detected in many
cartilage:
35.0
large intestine:
51.4
lung:
52.1
synovial tissue:
47.7
GPSM3
ENSSSCG00000001439
ENSG00000213654
G-protein-signaling modulator 3
Tissue enhanced
Detected in many
lymphoid tissue:
77.1
GPX3
ENSSSCG00000036438
ENSG00000211445
Glutathione peroxidase 3 precursor
Group enriched
Detected in many
kidney:
521.1
ovary:
496.9
GRASP
ENSSSCG00000000234
ENSG00000161835
General receptor for phosphoinositides 1 associated scaffold protein
Low tissue specificity
Detected in many
GRIK4
ENSSSCG00000015131
ENSG00000149403
Glutamate ionotropic receptor kainate type subunit 4
Tissue enhanced
Detected in many
brain:
16.4
male glands:
15.3
GRK5
ENSSSCG00000010683
ENSG00000198873
G protein-coupled receptor kinase 5
Tissue enriched
Detected in many
cartilage:
92.6
GSPT1
ENSSSCG00000021118
ENSG00000103342
G1 to S phase transition 1
Tissue enhanced
Detected in all
lens:
116.6
GUCY1A1
ENSSSCG00000008866
ENSG00000164116
Guanylate cyclase soluble subunit alpha-3
Low tissue specificity
Detected in many
GUCY1A2
ENSSSCG00000024613
ENSG00000152402
Guanylate cyclase 1 soluble subunit alpha 2
Tissue enhanced
Detected in many
brain:
28.2
lymphoid tissue:
27.3
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