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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
F8
ENSSSCG00000012818
ENSG00000185010
Coagulation factor VIII precursor
Tissue enhanced
Detected in many
penis:
47.6
FABP4
ENSSSCG00000040681
ENSG00000170323
Fatty acid-binding protein, adipocyte
Tissue enhanced
Detected in many
adipose tissue:
239.6
aorta:
112.0
bone marrow:
191.5
FABP5
ENSSSCG00000006153
ENSG00000164687
Fatty acid-binding protein, epidermal
Tissue enriched
Detected in many
lens:
391.5
FAIM2
ENSSSCG00000000206
ENSG00000135472
Fas apoptotic inhibitory molecule 2
Tissue enhanced
Detected in many
brain:
65.4
pineal gland:
35.4
retina:
35.6
FAM110B
ENSSSCG00000006240
ENSG00000169122
Family with sequence similarity 110 member B
Tissue enriched
Detected in many
cartilage:
120.4
FAM110C
ENSSSCG00000032221
ENSG00000184731
Family with sequence similarity 110 member C
Tissue enhanced
Detected in many
male glands:
34.8
FAM110D
ENSSSCG00000031074
ENSG00000197245
Protein FAM110D isoform 1
Tissue enhanced
Detected in many
mesothelial tissue:
39.4
FAM124B
ENSSSCG00000021852
ENSG00000124019
Family with sequence similarity 124 member B
Low tissue specificity
Detected in many
FAM13C
ENSSSCG00000010209
ENSG00000148541
Family with sequence similarity 13 member C
Low tissue specificity
Detected in many
FAM167B
ENSSSCG00000003616
ENSG00000183615
Family with sequence similarity 167 member B
Low tissue specificity
Detected in many
FAM171A1
ENSSSCG00000011047
ENSG00000148468
Family with sequence similarity 171 member A1
Low tissue specificity
Detected in all
FAM20A
ENSSSCG00000017258
ENSG00000108950
FAM20A, golgi associated secretory pathway pseudokinase
Tissue enhanced
Detected in many
cartilage:
63.8
liver:
25.9
FAM20C
ENSSSCG00000020813
ENSG00000177706
FAM20C, golgi associated secretory pathway kinase
Tissue enhanced
Detected in all
cartilage:
47.3
FAM213A
ENSSSCG00000010340
ENSG00000122378
Redox-regulatory protein FAM213A isoform 2
Low tissue specificity
Detected in all
FAM240A
ENSSSCG00000032551
ENSG00000283473
Family with sequence similarity 240 member A
Tissue enhanced
Detected in many
fallopian tube:
17.7
FAM3C
ENSSSCG00000016616
ENSG00000196937
Family with sequence similarity 3 member C
Tissue enhanced
Detected in all
male glands:
75.3
FAM46A
ENSSSCG00000004464
ENSG00000112773
Family with sequence similarity 46 member A
Low tissue specificity
Detected in all
FAM46B
ENSSSCG00000036755
ENSG00000158246
Family with sequence similarity 46 member B
Tissue enhanced
Detected in many
smooth muscle:
36.4
FAM49A
ENSSSCG00000008617
ENSG00000197872
Family with sequence similarity 49 member A
Tissue enhanced
Detected in all
lymphoid tissue:
42.3
FAM84B
ENSSSCG00000005967
ENSG00000168672
Family with sequence similarity 84 member B
Tissue enhanced
Detected in all
male glands:
92.2
FAP
ENSSSCG00000015896
ENSG00000078098
Fibroblast activation protein alpha
Tissue enriched
Detected in many
cartilage:
50.6
FBLIM1
ENSSSCG00000003465
ENSG00000162458
Filamin binding LIM protein 1
Low tissue specificity
Detected in all
FBLN2
ENSSSCG00000011609
ENSG00000163520
Fibulin 2
Tissue enhanced
Detected in all
mesothelial tissue:
88.7
FBLN7
ENSSSCG00000008101
ENSG00000144152
Fibulin 7
Tissue enriched
Detected in many
cartilage:
150.7
FBXO4
ENSSSCG00000016865
ENSG00000151876
F-box protein 4
Low tissue specificity
Detected in all
FCER1G
ENSSSCG00000006357
ENSG00000158869
High affinity immunoglobulin epsilon receptor subunit gamma
Tissue enhanced
Detected in many
bone marrow:
72.1
lymphoid tissue:
92.3
synovial tissue:
75.2
FGD4
ENSSSCG00000000530
ENSG00000139132
FYVE, RhoGEF and PH domain containing 4
Low tissue specificity
Detected in all
FGD5
ENSSSCG00000011598
ENSG00000154783
FYVE, RhoGEF and PH domain containing 5
Low tissue specificity
Detected in many
FGF1
ENSSSCG00000024954
ENSG00000113578
Fibroblast growth factor 1
Tissue enhanced
Detected in many
brain:
37.4
heart:
22.8
lens:
33.4
pineal gland:
28.4
FGF18
ENSSSCG00000016997
ENSG00000156427
Fibroblast growth factor 18
Tissue enhanced
Detected in many
cartilage:
43.5
FGFR2
ENSSSCG00000010698
ENSG00000066468
Fibroblast growth factor receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
96.5
lens:
85.2
FGL2
ENSSSCG00000015413
ENSG00000127951
Fibroleukin precursor
Tissue enhanced
Detected in all
synovial tissue:
62.2
FHL2
ENSSSCG00000008147
ENSG00000115641
Four and a half LIM domains 2
Tissue enhanced
Detected in many
heart:
123.6
FHL5
ENSSSCG00000004340
ENSG00000112214
Four and a half LIM domains protein 5
Tissue enhanced
Detected in many
dura mater:
21.7
FHOD3
ENSSSCG00000027935
ENSG00000134775
Formin homology 2 domain containing 3
Tissue enhanced
Detected in many
heart:
72.8
FIBIN
ENSSSCG00000022592
ENSG00000176971
Fin bud initiation factor homolog (zebrafish)
Tissue enhanced
Detected in many
cartilage:
83.3
dura mater:
39.3
FLI1
ENSSSCG00000015237
ENSG00000151702
Fli-1 proto-oncogene, ETS transcription factor
Low tissue specificity
Detected in many
FLRT2
ENSSSCG00000040166
ENSG00000185070
Fibronectin leucine rich transmembrane protein 2
Tissue enhanced
Detected in all
lens:
42.3
FLT1
ENSSSCG00000009320
ENSG00000102755
Fms related tyrosine kinase 1
Low tissue specificity
Detected in many
FLT4
ENSSSCG00000014007
ENSG00000037280
Fms related tyrosine kinase 4
Low tissue specificity
Detected in many
FMO1
ENSSSCG00000015268
ENSG00000010932
Dimethylaniline monooxygenase [N-oxide-forming] 1
Tissue enriched
Detected in many
liver:
195.8
FMO2
ENSSSCG00000015267
ENSG00000094963
Flavin containing monooxygenase 2
Tissue enhanced
Detected in many
adipose tissue:
44.7
dura mater:
53.5
lung:
37.0
upper respiratory system:
66.9
FMOD
ENSSSCG00000015270
ENSG00000122176
Fibromodulin
Tissue enriched
Detected in many
cartilage:
254.1
FNBP1L
ENSSSCG00000006894
ENSG00000137942
Formin binding protein 1 like
Low tissue specificity
Detected in all
FOLH1B
ENSSSCG00000027093
ENSG00000086205
Glutamate carboxypeptidase 2
Tissue enhanced
Detected in many
brain:
60.3
lens:
40.1
FOLR2
ENSSSCG00000014812
ENSG00000165457
Folate receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
59.1
liver:
94.8
FOXA2
ENSSSCG00000007114
ENSG00000125798
Forkhead box A2
Tissue enhanced
Detected in many
cartilage:
20.4
liver:
22.2
male glands:
33.3
stomach:
37.4
FOXC1
ENSSSCG00000039756
ENSG00000054598
Forkhead box C1
Tissue enhanced
Detected in many
cartilage:
121.3
salivary gland:
38.6
FOXC2
ENSSSCG00000029296
ENSG00000176692
Forkhead box C2
Tissue enhanced
Detected in many
cartilage:
61.3
penis:
46.1
vagus nerve:
63.1
FOXO3
ENSSSCG00000004387
ENSG00000118689
Forkhead box protein O3
Low tissue specificity
Detected in all
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