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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SMIM5
ENSSSCG00000038844
ENSG00000204323
Small integral membrane protein 5
Tissue enhanced
Detected in many
cartilage:
53.1
salivary gland:
28.4
SMPD3
ENSSSCG00000002764
ENSG00000103056
Sphingomyelin phosphodiesterase 3
Tissue enriched
Detected in many
cartilage:
115.7
SMPDL3B
ENSSSCG00000003582
ENSG00000130768
Sphingomyelin phosphodiesterase acid like 3B
Tissue enhanced
Detected in all
liver:
63.2
SNAP91
ENSSSCG00000004453
ENSG00000065609
Synaptosome associated protein 91
Tissue enhanced
Detected in some
brain:
54.9
choroid plexus:
24.8
pineal gland:
39.4
retina:
34.6
SNAPC1
ENSSSCG00000005097
ENSG00000023608
Small nuclear RNA activating complex polypeptide 1
Low tissue specificity
Detected in all
SNCA
ENSSSCG00000009203
ENSG00000145335
Alpha-synuclein
Group enriched
Detected in many
brain:
53.8
lens:
13.9
vagus nerve:
55.7
SNCG
ENSSSCG00000026850
ENSG00000173267
Gamma-synuclein
Tissue enriched
Detected in many
lens:
267.5
SNORC
ENSSSCG00000016294
ENSG00000182600
Uncharacterized protein C2orf82 homolog precursor
Tissue enriched
Detected in some
cartilage:
229.6
SNTB1
ENSSSCG00000005994
ENSG00000172164
Syntrophin beta 1
Tissue enhanced
Detected in many
choroid plexus:
68.3
lens:
77.2
SOBP
ENSSSCG00000004379
ENSG00000112320
Sine oculis binding protein homolog
Tissue enhanced
Detected in many
cartilage:
62.5
SOCS1
ENSSSCG00000027855
ENSG00000185338
Suppressor of cytokine signaling 1
Tissue enhanced
Detected in many
cartilage:
76.2
stomach:
35.0
SOD3
ENSSSCG00000028814
ENSG00000109610
Superoxide dismutase 3
Tissue enhanced
Detected in many
cartilage:
162.0
ovary:
83.5
SOX10
ENSSSCG00000039315
ENSG00000100146
Transcription factor SOX-10
Tissue enhanced
Detected in many
brain:
61.7
salivary gland:
39.3
vagus nerve:
94.8
SOX13
ENSSSCG00000015277
ENSG00000143842
SRY-box 13
Low tissue specificity
Detected in many
SOX17
ENSSSCG00000006256
ENSG00000164736
SRY-box 17
Tissue enhanced
Detected in many
endometrium:
45.6
fallopian tube:
28.2
SOX18
ENSSSCG00000037865
ENSG00000203883
SRY-box 18
Tissue enhanced
Detected in many
adipose tissue:
49.2
SOX4
ENSSSCG00000001081
ENSG00000124766
SRY-box 4
Tissue enhanced
Detected in many
cartilage:
67.4
SOX5
ENSSSCG00000000567
ENSG00000134532
SRY-box 5
Tissue enhanced
Detected in many
cartilage:
117.7
SOX8
ENSSSCG00000037970
ENSG00000005513
SRY-box 8
Tissue enhanced
Detected in many
brain:
46.0
cartilage:
42.6
vagus nerve:
45.0
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SP7
ENSSSCG00000034328
ENSG00000170374
Sp7 transcription factor
Group enriched
Detected in many
bone marrow:
15.2
brain:
11.4
cartilage:
23.7
dura mater:
28.3
SPAAR
ENSSSCG00000035872
ENSG00000235387
Small regulatory polypeptide of amino acid response
Tissue enhanced
Detected in many
adipose tissue:
45.9
heart:
42.6
SPARCL1
ENSSSCG00000009222
ENSG00000152583
SPARC-like protein 1 precursor
Tissue enhanced
Detected in all
cervix:
136.6
smooth muscle:
134.5
SPATA1
ENSSSCG00000029882
ENSG00000122432
Spermatogenesis associated 1
Tissue enhanced
Detected in all
smooth muscle:
29.9
SPATA46
ENSSSCG00000006343
ENSG00000171722
Spermatogenesis associated 46
Tissue enhanced
Detected in many
cartilage:
34.1
male glands:
35.5
testis:
44.0
SPNS2
ENSSSCG00000017879
ENSG00000183018
Sphingolipid transporter 2
Low tissue specificity
Detected in many
SPOCK2
ENSSSCG00000010283
ENSG00000107742
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2
Tissue enhanced
Detected in many
brain:
67.5
SPON1
ENSSSCG00000013393
ENSG00000262655
Spondin 1
Tissue enhanced
Detected in all
ovary:
52.6
SPON2
ENSSSCG00000039488
ENSG00000159674
Spondin 2
Tissue enhanced
Detected in many
cartilage:
86.5
SPP1
ENSSSCG00000009216
ENSG00000118785
Osteopontin
Tissue enhanced
Detected in many
gallbladder:
209.5
SPSB1
ENSSSCG00000035940
ENSG00000171621
SplA/ryanodine receptor domain and SOCS box containing 1
Tissue enhanced
Detected in many
cartilage:
51.5
SRCIN1
ENSSSCG00000018056
ENSG00000277363
SRC kinase signaling inhibitor 1
Group enriched
Detected in many
brain:
42.1
skin:
49.3
SRGAP3
ENSSSCG00000033624
ENSG00000196220
SLIT-ROBO Rho GTPase activating protein 3
Tissue enhanced
Detected in many
brain:
27.3
SRPX2
ENSSSCG00000012482
ENSG00000102359
Sushi repeat containing protein, X-linked 2
Tissue enriched
Detected in many
cartilage:
73.6
SSPN
ENSSSCG00000025531
ENSG00000123096
Sarcospan
Tissue enhanced
Detected in many
smooth muscle:
47.9
SSUH2
ENSSSCG00000023082
ENSG00000125046
Ssu-2 homolog (C. elegans)
Tissue enhanced
Detected in many
cartilage:
12.9
epididymis:
16.7
ST6GAL2
ENSSSCG00000008141
ENSG00000144057
ST6 beta-galactoside alpha-2,6-sialyltransferase 2
Tissue enhanced
Detected in many
adipose tissue:
23.5
brain:
16.0
large intestine:
27.4
retina:
15.6
ST6GALNAC2
ENSSSCG00000017177
ENSG00000070731
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
Low tissue specificity
Detected in many
ST8SIA4
ENSSSCG00000035539
ENSG00000113532
CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase precursor
Tissue enhanced
Detected in many
lymphoid tissue:
30.4
STAB1
ENSSSCG00000011443
ENSG00000010327
Stabilin 1
Tissue enhanced
Detected in many
synovial tissue:
60.8
STAC
ENSSSCG00000023085
ENSG00000144681
SH3 and cysteine rich domain
Tissue enhanced
Detected in many
ductus deferens:
34.2
STC2
ENSSSCG00000016983
ENSG00000113739
Stanniocalcin-2 precursor
Tissue enhanced
Detected in all
cartilage:
31.8
STEAP3
ENSSSCG00000029304
ENSG00000115107
STEAP3 metalloreductase
Tissue enhanced
Detected in many
liver:
45.4
STMND1
ENSSSCG00000001067
ENSG00000230873
Stathmin domain containing 1
Tissue enhanced
Detected in some
choroid plexus:
17.5
endometrium:
15.0
fallopian tube:
42.4
lung:
18.8
upper respiratory system:
30.3
STOML3
ENSSSCG00000009366
ENSG00000133115
Stomatin like 3
Tissue enhanced
Detected in all
fallopian tube:
39.0
STUM
ENSSSCG00000024288
ENSG00000203685
Stum, mechanosensory transduction mediator homolog
Tissue enhanced
Detected in many
brain:
49.5
smooth muscle:
22.5
STX5
ENSSSCG00000026293
ENSG00000162236
Syntaxin-5
Group enriched
Detected in many
cartilage:
18.5
lens:
32.2
male glands:
55.3
SULF2
ENSSSCG00000007456
ENSG00000196562
Sulfatase 2
Tissue enhanced
Detected in all
cartilage:
77.4
cornea:
58.6
SULT1A3
ENSSSCG00000021557
ENSG00000196502,ENSG00000197165,ENSG00000213648,ENSG00000261052
Sulfotransferase 1A3
Tissue enhanced
Detected in many
adipose tissue:
70.7
cervix:
81.1
SYCE2
ENSSSCG00000013740
ENSG00000161860
Synaptonemal complex central element protein 2
Tissue enriched
Detected in all
testis:
57.4
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