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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SGK1
ENSSSCG00000021443
ENSG00000118515
Serine/threonine-protein kinase Sgk1
Tissue enhanced
Detected in all
choroid plexus:
79.9
SGMS2
ENSSSCG00000009152
ENSG00000164023
Sphingomyelin synthase 2
Tissue enhanced
Detected in all
choroid plexus:
40.1
SH2D3C
ENSSSCG00000005620
ENSG00000095370
SH2 domain containing 3C
Low tissue specificity
Detected in many
SH2D4A
ENSSSCG00000033750
ENSG00000104611
SH2 domain containing 4A
Tissue enhanced
Detected in many
stomach:
28.6
SH2D6
ENSSSCG00000008240
ENSG00000152292
SH2 domain containing 6
Tissue enhanced
Detected in many
epididymis:
97.4
vagus nerve:
45.8
SH3BGRL2
ENSSSCG00000032015
ENSG00000198478
SH3 domain binding glutamate rich protein like 2
Tissue enhanced
Detected in many
large intestine:
64.3
lens:
119.2
SH3BP4
ENSSSCG00000034692
ENSG00000130147
SH3 domain binding protein 4
Low tissue specificity
Detected in all
SH3GL3
ENSSSCG00000001795
ENSG00000140600
SH3 domain containing GRB2 like 3, endophilin A3
Group enriched
Detected in many
brain:
43.5
testis:
22.4
SH3PXD2B
ENSSSCG00000027378
ENSG00000174705
SH3 and PX domains 2B
Low tissue specificity
Detected in all
SH3RF1
ENSSSCG00000009716
ENSG00000154447
SH3 domain containing ring finger 1
Tissue enhanced
Detected in all
cartilage:
85.0
SH3RF2
ENSSSCG00000014410
ENSG00000156463
SH3 domain containing ring finger 2
Tissue enhanced
Detected in many
skin:
72.0
SH3TC2
ENSSSCG00000023279
ENSG00000169247
SH3 domain and tetratricopeptide repeats 2
Tissue enhanced
Detected in many
brain:
24.0
vagus nerve:
47.3
SHANK3
ENSSSCG00000031925
ENSG00000251322
SH3 and multiple ankyrin repeat domains 3
Low tissue specificity
Detected in all
SHE
ENSSSCG00000006547
ENSG00000169291
Src homology 2 domain containing E
Low tissue specificity
Detected in many
SHISA2
ENSSSCG00000030113
ENSG00000180730
Shisa family member 2
Tissue enhanced
Detected in many
cartilage:
90.7
male glands:
23.3
skeletal muscle:
26.0
SHISA3
ENSSSCG00000040147
ENSG00000178343
Shisa family member 3
Tissue enhanced
Detected in many
cartilage:
17.0
vagus nerve:
61.0
SHTN1
ENSSSCG00000010665
ENSG00000187164
Shootin 1
Tissue enhanced
Detected in many
brain:
83.8
SIGIRR
ENSSSCG00000024389
ENSG00000185187
Single Ig IL-1-related receptor
Low tissue specificity
Detected in many
SIK2
ENSSSCG00000032941
ENSG00000170145
Salt inducible kinase 2
Tissue enhanced
Detected in all
adipose tissue:
63.3
SIPA1L1
ENSSSCG00000002332
ENSG00000197555
Signal induced proliferation associated 1 like 1
Low tissue specificity
Detected in all
SIX1
ENSSSCG00000005087
ENSG00000126778
Homeobox protein SIX1
Tissue enhanced
Detected in many
pituitary gland:
39.5
salivary gland:
31.6
skeletal muscle:
47.3
SIX4
ENSSSCG00000005089
ENSG00000100625
Homeobox protein SIX4
Tissue enhanced
Detected in many
male glands:
28.3
salivary gland:
30.7
skeletal muscle:
26.9
upper respiratory system:
22.6
SLA-DMA
ENSSSCG00000001470
ENSG00000204257
SLA-DM alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
SLA-DMB
ENSSSCG00000001469
ENSG00000242574
MHC class II, DM beta precursor
Low tissue specificity
Detected in many
SLA-DOA
ENSSSCG00000001472
ENSG00000204252
SLA class II histocompatibility antigen, DO alpha chain precursor
Low tissue specificity
Detected in all
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLC10A6
ENSSSCG00000028952
ENSG00000145283
Solute carrier family 10 member 6
Tissue enhanced
Detected in many
mouth:
27.1
skin:
30.3
SLC12A7
ENSSSCG00000034302
ENSG00000113504
Solute carrier family 12 member 7
Tissue enhanced
Detected in many
heart:
47.8
SLC16A14
ENSSSCG00000016260
ENSG00000163053
Solute carrier family 16 member 14
Low tissue specificity
Detected in many
SLC16A3
ENSSSCG00000024018
ENSG00000141526
Solute carrier family 16 member 3
Tissue enhanced
Detected in many
cartilage:
38.5
lens:
26.2
skeletal muscle:
44.7
SLC1A4
ENSSSCG00000028282
ENSG00000115902
Solute carrier family 1 member 4
Tissue enhanced
Detected in many
lens:
49.8
skin:
26.5
SLC1A5
ENSSSCG00000003105
ENSG00000105281
Solute carrier family 1 member 5
Tissue enhanced
Detected in many
male glands:
70.1
SLC20A1
ENSSSCG00000032288
ENSG00000144136
Solute carrier family 20 member 1
Tissue enhanced
Detected in all
cartilage:
78.6
SLC2A12
ENSSSCG00000004172
ENSG00000146411
Solute carrier family 2 member 12
Tissue enriched
Detected in many
choroid plexus:
143.9
SLC38A3
ENSSSCG00000011397
ENSG00000188338
Solute carrier family 38 member 3
Group enriched
Detected in many
choroid plexus:
43.4
liver:
136.6
retina:
56.5
SLC39A8
ENSSSCG00000009169
ENSG00000138821
Solute carrier family 39 member 8
Tissue enhanced
Detected in many
male glands:
64.5
mesothelial tissue:
55.2
upper respiratory system:
35.1
SLC43A2
ENSSSCG00000024108
ENSG00000167703
Solute carrier family 43 member 2
Tissue enhanced
Detected in all
cartilage:
62.3
SLC4A11
ENSSSCG00000007157
ENSG00000088836
Solute carrier family 4 member 11
Tissue enhanced
Detected in many
cornea:
94.2
kidney:
44.4
SLC52A3
ENSSSCG00000007199
ENSG00000101276
Solute carrier family 52 member 3
Tissue enhanced
Detected in all
male glands:
43.8
SLC6A17
ENSSSCG00000006811
ENSG00000197106
Solute carrier family 6 member 17
Tissue enhanced
Detected in many
brain:
42.8
SLC7A1
ENSSSCG00000029456
ENSG00000139514
High affinity cationic amino acid transporter 1
Tissue enhanced
Detected in many
cartilage:
40.4
skin:
41.9
SLC7A7
ENSSSCG00000002041
ENSG00000155465
Y+L amino acid transporter 1
Tissue enhanced
Detected in many
kidney:
72.2
SLC8A1
ENSSSCG00000036418
ENSG00000183023
Solute carrier family 8 member A1
Tissue enhanced
Detected in many
heart:
71.3
SLC8A3
ENSSSCG00000002315
ENSG00000100678
Solute carrier family 8 member A3
Tissue enhanced
Detected in many
brain:
19.5
cartilage:
43.4
skeletal muscle:
17.7
SLC9A3
ENSSSCG00000039413
ENSG00000066230
Solute carrier family 9 member A3
Group enriched
Detected in some
gallbladder:
88.1
kidney:
22.6
large intestine:
50.9
male glands:
73.6
stomach:
40.8
SLC9A3R2
ENSSSCG00000008038
ENSG00000065054
Na(+)/H(+) exchange regulatory cofactor NHE-RF2
Low tissue specificity
Detected in all
SLCO2B1
ENSSSCG00000014851
ENSG00000137491
Solute carrier organic anion transporter family member 2B1
Tissue enhanced
Detected in many
liver:
74.6
SLIT2
ENSSSCG00000008749
ENSG00000145147
Slit guidance ligand 2
Low tissue specificity
Detected in many
SLPI
ENSSSCG00000039573
ENSG00000124107
Antileukoproteinase
Tissue enhanced
Detected in many
adipose tissue:
31.8
aorta:
33.3
fallopian tube:
64.8
SMAD1
ENSSSCG00000009040
ENSG00000170365
Mothers against decapentaplegic homolog 1
Low tissue specificity
Detected in all
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