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Chromosome
1
2
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RET
ENSSSCG00000010199
ENSG00000165731
Ret proto-oncogene
Tissue enriched
Detected in many
brain:
52.4
RETREG1
ENSSSCG00000016792
ENSG00000154153
Reticulophagy regulator 1
Low tissue specificity
Detected in all
RFTN1
ENSSSCG00000011198
ENSG00000131378
Raftlin, lipid raft linker 1
Tissue enhanced
Detected in many
lymphoid tissue:
43.9
RHOD
ENSSSCG00000022726
ENSG00000173156
Ras homolog family member D
Tissue enhanced
Detected in many
cartilage:
34.1
RIMKLB
ENSSSCG00000000665
ENSG00000166532
Ribosomal modification protein rimK like family member B
Tissue enhanced
Detected in all
lens:
52.0
RIPPLY2
ENSSSCG00000004451
ENSG00000203877
Ripply transcriptional repressor 2
Group enriched
Detected in some
brain:
31.9
cartilage:
12.3
pineal gland:
28.7
pituitary gland:
16.9
RNASE1
ENSSSCG00000031649
ENSG00000129538
Ribonuclease pancreatic precursor
Tissue enhanced
Detected in many
brain:
72.9
stomach:
33.9
RND3
ENSSSCG00000040445
ENSG00000115963
Rho-related GTP-binding protein RhoE precursor
Low tissue specificity
Detected in all
ROBO1
ENSSSCG00000012001
ENSG00000169855
Roundabout guidance receptor 1
Tissue enhanced
Detected in many
brain:
33.2
cartilage:
33.8
ovary:
33.1
ROBO4
ENSSSCG00000015203
ENSG00000154133
Roundabout guidance receptor 4
Low tissue specificity
Detected in many
RPE65
ENSSSCG00000003794
ENSG00000116745
RPE65, retinoid isomerohydrolase
Group enriched
Detected in some
brain:
15.5
pituitary gland:
15.7
retina:
32.9
RPRM
ENSSSCG00000037225
ENSG00000177519
Reprimo, TP53 dependent G2 arrest mediator homolog
Group enriched
Detected in many
brain:
38.8
ductus deferens:
116.1
RSAD2
ENSSSCG00000008648
ENSG00000134321
Radical S-adenosyl methionine domain-containing protein 2
Tissue enhanced
Detected in many
small intestine:
50.0
RSPO3
ENSSSCG00000004218
ENSG00000146374
R-spondin-3 precursor
Tissue enhanced
Detected in many
ductus deferens:
44.6
dura mater:
45.6
RSPRY1
ENSSSCG00000002820
ENSG00000159579
Ring finger and SPRY domain containing 1
Low tissue specificity
Detected in all
RTN4RL2
ENSSSCG00000040919
ENSG00000186907
Reticulon 4 receptor like 2
Low tissue specificity
Detected in all
RUBCNL
ENSSSCG00000009410
ENSG00000102445
RUN and cysteine rich domain containing beclin 1 interacting protein like
Low tissue specificity
Detected in all
RUNDC1
ENSSSCG00000035057
ENSG00000198863
RUN domain containing 1
Low tissue specificity
Detected in all
RUNX2
ENSSSCG00000001710
ENSG00000124813
Runt related transcription factor 2
Tissue enhanced
Detected in many
ovary:
40.2
stomach:
49.4
RXFP4
ENSSSCG00000006503
ENSG00000173080
Relaxin-3 receptor 2
Tissue enhanced
Detected in many
cartilage:
15.9
S100A1
ENSSSCG00000031053
ENSG00000160678
S100 calcium binding protein A1
Tissue enhanced
Detected in many
brain:
250.1
cartilage:
96.8
pineal gland:
70.9
S100A3
ENSSSCG00000006579
ENSG00000188015
S100 calcium binding protein A3
Tissue enriched
Detected in some
skin:
126.2
S1PR1
ENSSSCG00000029849
ENSG00000170989
Sphingosine-1-phosphate receptor 1
Low tissue specificity
Detected in all
SAMD11
ENSSSCG00000033509
ENSG00000187634
Sterile alpha motif domain containing 11
Tissue enriched
Detected in many
retina:
108.3
SAMD5
ENSSSCG00000004112
ENSG00000203727
Sterile alpha motif domain containing 5
Tissue enhanced
Detected in many
vagus nerve:
47.2
SCARA3
ENSSSCG00000020846
ENSG00000168077
Scavenger receptor class A member 3
Tissue enhanced
Detected in many
cartilage:
133.2
penis:
53.5
SCN1B
ENSSSCG00000023267
ENSG00000105711
Sodium voltage-gated channel beta subunit 1
Group enriched
Detected in many
brain:
99.0
skeletal muscle:
52.5
SCN7A
ENSSSCG00000015914
ENSG00000136546
Sodium voltage-gated channel alpha subunit 7
Group enriched
Detected in many
ductus deferens:
24.9
vagus nerve:
56.7
SCNN1A
ENSSSCG00000000707
ENSG00000111319
Amiloride-sensitive sodium channel subunit alpha
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
40.2
stomach:
37.7
SDC3
ENSSSCG00000003592
ENSG00000162512
Syndecan 3
Tissue enhanced
Detected in all
brain:
64.9
cartilage:
42.7
SDF2
ENSSSCG00000017772
ENSG00000132581
Stromal cell derived factor 2
Low tissue specificity
Detected in all
SEL1L3
ENSSSCG00000022446
ENSG00000091490
SEL1L family member 3
Tissue enhanced
Detected in many
brain:
46.9
esophagus:
60.4
SELENOP
ENSSSCG00000021208
ENSG00000250722
Selenoprotein P precursor
Tissue enhanced
Detected in all
liver:
184.0
ovary:
174.6
SELP
ENSSSCG00000006288
ENSG00000174175
P-selectin precursor
Low tissue specificity
Detected in many
SEMA3A
ENSSSCG00000015398
ENSG00000075213
Semaphorin 3A
Tissue enriched
Detected in many
cartilage:
141.5
SEMA3C
ENSSSCG00000023784
ENSG00000075223
Semaphorin 3C
Tissue enhanced
Detected in many
cartilage:
97.2
SEMA3D
ENSSSCG00000015396
ENSG00000153993
Semaphorin 3D
Group enriched
Detected in many
cartilage:
103.9
thyroid gland:
27.0
SEMA3E
ENSSSCG00000015399
ENSG00000170381
Semaphorin 3E
Tissue enhanced
Detected in many
choroid plexus:
35.4
SEMA3F
ENSSSCG00000011398
ENSG00000001617
Semaphorin 3F
Tissue enhanced
Detected in many
mesothelial tissue:
41.2
SEMA3G
ENSSSCG00000011440
ENSG00000010319
Semaphorin 3G
Low tissue specificity
Detected in many
SEMA6B
ENSSSCG00000035176
ENSG00000167680
Semaphorin 6B
Low tissue specificity
Detected in all
SEMA7A
ENSSSCG00000023165
ENSG00000138623
Semaphorin 7A (John Milton Hagen blood group)
Tissue enhanced
Detected in many
lymphoid tissue:
35.5
ovary:
49.9
SERPINA1
ENSSSCG00000002476
ENSG00000197249
Alpha-1-antitrypsin precursor
Tissue enhanced
Detected in many
cartilage:
61.3
gallbladder:
123.2
liver:
272.0
SERPINE2
ENSSSCG00000016233
ENSG00000135919
Glia-derived nexin precursor
Group enriched
Detected in many
cartilage:
193.9
ovary:
110.5
SERTM1
ENSSSCG00000040557
ENSG00000180440
Serine rich and transmembrane domain containing 1
Tissue enhanced
Detected in all
brain:
26.6
SFRP1
ENSSSCG00000025822
ENSG00000104332
Secreted frizzled related protein 1
Tissue enhanced
Detected in many
choroid plexus:
166.0
SFRP4
ENSSSCG00000035299
ENSG00000106483
Secreted frizzled-related protein 4 precursor
Tissue enhanced
Detected in many
dura mater:
134.2
upper respiratory system:
41.4
vagus nerve:
48.3
SGCE
ENSSSCG00000015328
ENSG00000127990
Epsilon-sarcoglycan
Low tissue specificity
Detected in all
SGCG
ENSSSCG00000009281
ENSG00000102683
Sarcoglycan gamma
Tissue enhanced
Detected in many
cartilage:
26.2
heart:
33.0
skeletal muscle:
47.2
SGIP1
ENSSSCG00000025243
ENSG00000118473
SH3 domain GRB2 like endophilin interacting protein 1
Tissue enhanced
Detected in many
brain:
34.6
pineal gland:
21.7
retina:
74.1
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