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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PROM1
ENSSSCG00000008745
ENSG00000007062
Prominin 1
Group enriched
Detected in many
male glands:
120.2
retina:
46.7
upper respiratory system:
41.6
PROS1
ENSSSCG00000025463
ENSG00000184500
Protein S
Tissue enhanced
Detected in all
choroid plexus:
61.8
liver:
44.4
PROX1
ENSSSCG00000015584
ENSG00000117707
Prospero homeobox protein 1
Group enriched
Detected in many
lens:
191.6
liver:
61.8
PRR19
ENSSSCG00000003024
ENSG00000188368
Proline rich 19
Low tissue specificity
Detected in all
PRR5L
ENSSSCG00000013292
ENSG00000135362
Proline rich 5 like
Tissue enhanced
Detected in many
adipose tissue:
32.8
brain:
35.0
PRSS23
ENSSSCG00000014921
ENSG00000150687
Serine protease 23
Tissue enhanced
Detected in all
ovary:
56.4
PRSS35
ENSSSCG00000004452
ENSG00000146250
Serine protease 35
Tissue enhanced
Detected in many
cartilage:
24.8
synovial tissue:
83.6
PSAT1
ENSSSCG00000005287
ENSG00000135069
Phosphoserine aminotransferase 1
Tissue enhanced
Detected in many
brain:
65.4
PSMB8
ENSSSCG00000026951
ENSG00000204264
Proteasome subunit beta 8
Tissue enhanced
Detected in many
large intestine:
38.6
lymphoid tissue:
36.3
PSMB9
ENSSSCG00000001463
ENSG00000240065
Proteasome subunit beta type-9
Tissue enhanced
Detected in many
large intestine:
46.4
PSORS1C2
ENSSSCG00000034471
ENSG00000204538
Psoriasis susceptibility 1 candidate gene 2 protein precursor
Tissue enriched
Detected in many
skin:
114.0
PSTPIP2
ENSSSCG00000004497
ENSG00000152229
Proline-serine-threonine phosphatase interacting protein 2
Group enriched
Detected in many
lymphoid tissue:
58.5
skeletal muscle:
57.8
PTAFR
ENSSSCG00000031788
ENSG00000169403
Platelet activating factor receptor
Tissue enhanced
Detected in many
synovial tissue:
31.3
PTCHD1
ENSSSCG00000032433
ENSG00000165186
Patched domain containing 1
Tissue enhanced
Detected in many
brain:
17.8
cartilage:
11.7
smooth muscle:
26.4
PTGER3
ENSSSCG00000003788
ENSG00000050628
Prostaglandin E2 receptor EP3 subtype
Tissue enhanced
Detected in many
cervix:
28.4
heart:
41.4
kidney:
29.8
PTGFR
ENSSSCG00000039548
ENSG00000122420
Prostaglandin F2-alpha receptor
Tissue enhanced
Detected in many
bone marrow:
26.3
dura mater:
25.4
ovary:
81.5
PTGIR
ENSSSCG00000026602
ENSG00000160013
Prostaglandin I2 receptor
Tissue enhanced
Detected in all
cartilage:
31.1
PTGS1
ENSSSCG00000005533
ENSG00000095303
Prostaglandin-endoperoxide synthase 1
Tissue enhanced
Detected in many
cartilage:
42.8
gallbladder:
36.3
PTH1R
ENSSSCG00000011326
ENSG00000160801
Parathyroid hormone/parathyroid hormone-related peptide receptor
Tissue enhanced
Detected in many
cartilage:
47.4
kidney:
49.9
PTK2B
ENSSSCG00000009664
ENSG00000120899
Protein tyrosine kinase 2 beta
Tissue enhanced
Detected in many
brain:
63.3
PTPN22
ENSSSCG00000006764
ENSG00000134242
Protein tyrosine phosphatase, non-receptor type 22
Tissue enhanced
Detected in many
large intestine:
13.3
lymphoid tissue:
29.9
PTPRB
ENSSSCG00000000504
ENSG00000127329
Protein tyrosine phosphatase, receptor type B
Low tissue specificity
Detected in many
PTPRD
ENSSSCG00000005194
ENSG00000153707
Protein tyrosine phosphatase, receptor type D
Tissue enhanced
Detected in many
brain:
50.8
cartilage:
34.8
kidney:
38.0
PTPRM
ENSSSCG00000028805
ENSG00000173482
Protein tyrosine phosphatase, receptor type M
Low tissue specificity
Detected in all
PTPRR
ENSSSCG00000025969
ENSG00000153233
Protein tyrosine phosphatase, receptor type R
Tissue enhanced
Detected in many
retina:
40.8
PYGB
ENSSSCG00000022815
ENSG00000100994
Glycogen phosphorylase B
Tissue enhanced
Detected in many
cervix:
45.8
heart:
104.4
RAB11FIP4
ENSSSCG00000017747
ENSG00000131242
RAB11 family interacting protein 4
Tissue enhanced
Detected in many
brain:
48.7
RAB3D
ENSSSCG00000016928
ENSG00000105514
RAB3D, member RAS oncogene family
Low tissue specificity
Detected in many
RALGAPA2
ENSSSCG00000026506
ENSG00000188559
Ral GTPase activating protein catalytic alpha subunit 2
Low tissue specificity
Detected in all
RAMP2
ENSSSCG00000017389
ENSG00000131477
Receptor activity-modifying protein 2 precursor
Low tissue specificity
Detected in many
RAP1GAP2
ENSSSCG00000034858
ENSG00000132359
RAP1 GTPase activating protein 2
Tissue enhanced
Detected in many
brain:
34.0
RAPGEF3
ENSSSCG00000023526
ENSG00000079337
Rap guanine nucleotide exchange factor 3
Low tissue specificity
Detected in many
RAPGEF5
ENSSSCG00000015383
ENSG00000136237
Rap guanine nucleotide exchange factor 5
Tissue enhanced
Detected in all
brain:
67.0
RASAL1
ENSSSCG00000009874
ENSG00000111344
RAS protein activator like 1
Tissue enhanced
Detected in many
adrenal gland:
30.1
salivary gland:
46.4
RASGRP2
ENSSSCG00000013023
ENSG00000068831
RAS guanyl-releasing protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
48.8
RASGRP3
ENSSSCG00000008509
ENSG00000152689
RAS guanyl releasing protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
48.3
RASIP1
ENSSSCG00000029151
ENSG00000105538
Ras interacting protein 1
Low tissue specificity
Detected in all
RASL11B
ENSSSCG00000008835
ENSG00000128045
RAS like family 11 member B
Tissue enhanced
Detected in all
cartilage:
59.1
RASL12
ENSSSCG00000038071
ENSG00000103710
RAS like family 12
Tissue enhanced
Detected in many
cervix:
37.1
smooth muscle:
38.1
RASSF7
ENSSSCG00000012854
ENSG00000099849
Ras association domain family member 7
Tissue enhanced
Detected in many
male glands:
26.0
stomach:
18.0
RASSF8
ENSSSCG00000000559
ENSG00000123094
Ras association domain family member 8
Low tissue specificity
Detected in all
RASSF9
ENSSSCG00000034948
ENSG00000198774
Ras association domain family member 9
Low tissue specificity
Detected in all
RBM24
ENSSSCG00000038455
ENSG00000112183
RNA binding motif protein 24
Tissue enhanced
Detected in many
heart:
48.1
lens:
39.2
skeletal muscle:
94.7
RBPMS
ENSSSCG00000015846
ENSG00000157110
RNA binding protein, mRNA processing factor
Tissue enhanced
Detected in many
smooth muscle:
125.5
RBPMS2
ENSSSCG00000004549
ENSG00000166831
RNA binding protein, mRNA processing factor 2
Tissue enhanced
Detected in many
smooth muscle:
91.8
urinary bladder:
45.2
RCAN1
ENSSSCG00000012050
ENSG00000159200
Calcipressin-1
Tissue enhanced
Detected in all
cartilage:
90.9
RCAN2
ENSSSCG00000001716
ENSG00000172348
Regulator of calcineurin 2
Tissue enriched
Detected in many
lens:
184.3
RCOR2
ENSSSCG00000013049
ENSG00000167771
REST corepressor 2
Tissue enhanced
Detected in many
cartilage:
37.3
REC8
ENSSSCG00000002001
ENSG00000100918
REC8 meiotic recombination protein
Low tissue specificity
Detected in many
RELN
ENSSSCG00000015426
ENSG00000189056
Reelin
Group enriched
Detected in many
brain:
60.5
vagus nerve:
49.0
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