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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PHF13
ENSSSCG00000027869
ENSG00000116273
PHD finger protein 13
Low tissue specificity
Detected in all
PHF19
ENSSSCG00000005510
ENSG00000119403
PHD finger protein 19
Tissue enhanced
Detected in all
cartilage:
53.7
PHF23
ENSSSCG00000017937
ENSG00000040633
PHD finger protein 23
Low tissue specificity
Detected in all
PHLDA1
ENSSSCG00000000521
ENSG00000139289
Pleckstrin homology like domain family A member 1
Tissue enhanced
Detected in all
cartilage:
197.4
salivary gland:
118.9
PHLDB2
ENSSSCG00000022081
ENSG00000144824
Pleckstrin homology like domain family B member 2
Low tissue specificity
Detected in many
PHTF2
ENSSSCG00000015410
ENSG00000006576
Putative homeodomain transcription factor 2
Tissue enhanced
Detected in all
cartilage:
54.5
skeletal muscle:
47.2
PI16
ENSSSCG00000001570
ENSG00000164530
Peptidase inhibitor 16 precursor
Group enriched
Detected in many
aorta:
78.7
mesothelial tissue:
207.1
PID1
ENSSSCG00000035058
ENSG00000153823
PTB-containing, cubilin and LRP1-interacting protein
Tissue enhanced
Detected in all
cartilage:
70.1
choroid plexus:
63.6
PIK3AP1
ENSSSCG00000010509
ENSG00000155629
Phosphoinositide 3-kinase adapter protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
49.3
PIK3C2B
ENSSSCG00000015283
ENSG00000133056
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
Low tissue specificity
Detected in all
PIK3R3
ENSSSCG00000003909
ENSG00000117461
Phosphoinositide-3-kinase regulatory subunit 3
Tissue enhanced
Detected in all
brain:
52.5
PKIA
ENSSSCG00000006163
ENSG00000171033
CAMP-dependent protein kinase inhibitor alpha
Tissue enhanced
Detected in many
brain:
40.7
heart:
51.8
pineal gland:
34.9
skeletal muscle:
41.3
PKNOX2
ENSSSCG00000015211
ENSG00000165495
PBX/knotted 1 homeobox 2
Low tissue specificity
Detected in all
PKP1
ENSSSCG00000030694
ENSG00000081277
Plakophilin 1
Group enriched
Detected in some
cornea:
63.6
mouth:
72.7
skin:
70.8
PLA1A
ENSSSCG00000011895
ENSG00000144837
Phospholipase A1 member A
Tissue enhanced
Detected in all
kidney:
56.9
PLA2G4E
ENSSSCG00000037292
ENSG00000188089
Phospholipase A2 group IVE
Tissue enhanced
Detected in some
brain:
9.5
skin:
38.0
PLCG2
ENSSSCG00000002688
ENSG00000197943
Phospholipase C gamma 2
Tissue enhanced
Detected in many
cartilage:
44.5
lymphoid tissue:
44.7
PLCL1
ENSSSCG00000016083
ENSG00000115896
Phospholipase C like 1 (inactive)
Tissue enhanced
Detected in many
brain:
48.4
kidney:
32.9
pineal gland:
47.2
PLCL2
ENSSSCG00000029811
ENSG00000154822
Phospholipase C like 2
Low tissue specificity
Detected in many
PLD4
ENSSSCG00000002554
ENSG00000166428
Phospholipase D family member 4
Tissue enhanced
Detected in many
lymphoid tissue:
30.6
synovial tissue:
41.7
PLEK2
ENSSSCG00000002290
ENSG00000100558
Pleckstrin 2
Low tissue specificity
Detected in many
PLEKHA6
ENSSSCG00000015281
ENSG00000143850
Pleckstrin homology domain containing A6
Tissue enhanced
Detected in many
stomach:
67.2
PLEKHA7
ENSSSCG00000013382
ENSG00000166689
Pleckstrin homology domain containing A7
Low tissue specificity
Detected in many
PLEKHB1
ENSSSCG00000014827
ENSG00000021300
Pleckstrin homology domain-containing family B member 1
Group enriched
Detected in many
brain:
163.6
pineal gland:
61.6
retina:
103.4
vagus nerve:
86.5
PLEKHO1
ENSSSCG00000022784
ENSG00000023902
Pleckstrin homology domain containing O1
Low tissue specificity
Detected in all
PLLP
ENSSSCG00000002818
ENSG00000102934
Plasmolipin
Group enriched
Detected in many
brain:
142.4
stomach:
38.7
vagus nerve:
61.9
PLN
ENSSSCG00000034163
ENSG00000198523
Cardiac phospholamban
Tissue enhanced
Detected in many
heart:
807.9
skeletal muscle:
233.5
PLOD2
ENSSSCG00000011689
ENSG00000152952
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
Tissue enhanced
Detected in many
cartilage:
73.6
PLP1
ENSSSCG00000012536
ENSG00000123560
Myelin proteolipid protein
Tissue enriched
Detected in some
brain:
604.9
PLVAP
ENSSSCG00000037025
ENSG00000130300
Plasmalemma vesicle associated protein
Tissue enhanced
Detected in all
lymphoid tissue:
112.6
PLXND1
ENSSSCG00000011592
ENSG00000004399
Plexin D1
Low tissue specificity
Detected in many
PMEPA1
ENSSSCG00000034259
ENSG00000124225
Protein TMEPAI
Tissue enhanced
Detected in many
cartilage:
70.3
PODNL1
ENSSSCG00000013762
ENSG00000132000
Podocan like 1
Tissue enhanced
Detected in many
cartilage:
24.7
vagus nerve:
31.8
POSTN
ENSSSCG00000009361
ENSG00000133110
Periostin isoform 1 precursor
Tissue enhanced
Detected in many
dura mater:
121.6
gallbladder:
82.5
mesothelial tissue:
89.0
upper respiratory system:
88.5
PP2D1
ENSSSCG00000027327
ENSG00000183977
Protein phosphatase 2C like domain containing 1
Tissue enriched
Detected in all
testis:
46.1
PPARG
ENSSSCG00000011579
ENSG00000132170
Peroxisome proliferator-activated receptor gamma
Tissue enhanced
Detected in many
adipose tissue:
52.9
aorta:
32.5
bone marrow:
41.6
large intestine:
29.5
lymphoid tissue:
33.8
PPL
ENSSSCG00000007927
ENSG00000118898
Periplakin
Tissue enhanced
Detected in many
cornea:
48.9
lens:
49.6
mouth:
70.7
PPP1R16B
ENSSSCG00000007350
ENSG00000101445
Protein phosphatase 1 regulatory subunit 16B
Tissue enhanced
Detected in many
brain:
54.6
PPP1R36
ENSSSCG00000002275
ENSG00000165807
Protein phosphatase 1 regulatory subunit 36
Tissue enhanced
Detected in many
choroid plexus:
38.3
testis:
44.9
PPP1R3C
ENSSSCG00000010464
ENSG00000119938
Protein phosphatase 1 regulatory subunit 3C
Tissue enhanced
Detected in many
cartilage:
76.4
cornea:
52.4
heart:
76.5
PPP1R9A
ENSSSCG00000015329
ENSG00000158528
Protein phosphatase 1 regulatory subunit 9A
Low tissue specificity
Detected in many
PPP2R2B
ENSSSCG00000028976
ENSG00000156475
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
Tissue enhanced
Detected in many
brain:
38.4
cornea:
32.3
lens:
62.1
retina:
33.4
PPP3CC
ENSSSCG00000032622
ENSG00000120910
Protein phosphatase 3 catalytic subunit gamma
Low tissue specificity
Detected in all
PRDM8
ENSSSCG00000036555
ENSG00000152784
PR/SET domain 8
Low tissue specificity
Detected in many
PRELP
ENSSSCG00000015271
ENSG00000188783
Proline and arginine rich end leucine rich repeat protein
Tissue enriched
Detected in many
cartilage:
236.7
PRIMA1
ENSSSCG00000002464
ENSG00000175785
Proline rich membrane anchor 1
Tissue enhanced
Detected in many
brain:
34.8
mesothelial tissue:
28.9
PRKAR2B
ENSSSCG00000037706
ENSG00000005249
Protein kinase cAMP-dependent type II regulatory subunit beta
Tissue enhanced
Detected in many
adipose tissue:
55.9
PRKCH
ENSSSCG00000005095
ENSG00000027075
Protein kinase C eta
Tissue enhanced
Detected in many
mesothelial tissue:
39.3
PRNP
ENSSSCG00000007039
ENSG00000171867
Prion protein
Low tissue specificity
Detected in all
PROCR
ENSSSCG00000026585
ENSG00000101000
Endothelial protein C receptor precursor
Tissue enhanced
Detected in all
cartilage:
40.2
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