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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1362 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NR4A2
ENSSSCG00000015871
ENSG00000153234
Nuclear receptor subfamily 4 group A member 2
Tissue enhanced
Detected in many
cartilage:
110.4
male glands:
119.9
vagus nerve:
70.0
NR4A3
ENSSSCG00000005385
ENSG00000119508
Nuclear receptor subfamily 4 group A member 3
Tissue enhanced
Detected in many
heart:
83.4
male glands:
171.7
NR6A1
ENSSSCG00000005589
ENSG00000148200
Nuclear receptor subfamily 6 group A member 1
Tissue enhanced
Detected in all
testis:
33.8
NRARP
ENSSSCG00000005844
ENSG00000198435
NOTCH regulated ankyrin repeat protein
Tissue enhanced
Detected in all
testis:
90.1
urinary bladder:
83.9
NRK
ENSSSCG00000012546
ENSG00000123572
Nik related kinase
Tissue enhanced
Detected in some
brain:
11.4
cartilage:
51.2
kidney:
16.0
NRROS
ENSSSCG00000023527
ENSG00000174004
Negative regulator of reactive oxygen species
Tissue enhanced
Detected in many
lymphoid tissue:
25.6
NT5E
ENSSSCG00000004291
ENSG00000135318
5'-nucleotidase ecto
Tissue enhanced
Detected in all
cartilage:
55.2
synovial tissue:
34.8
NTN1
ENSSSCG00000017993
ENSG00000065320
Netrin-1 precursor
Tissue enriched
Detected in many
cartilage:
142.9
NTN4
ENSSSCG00000000896
ENSG00000074527
Netrin 4
Tissue enhanced
Detected in many
cartilage:
59.6
penis:
30.7
NTN5
ENSSSCG00000003146
ENSG00000142233
Netrin 5
Tissue enhanced
Detected in many
male glands:
37.7
NTRK2
ENSSSCG00000010959
ENSG00000148053
Neurotrophic receptor tyrosine kinase 2
Tissue enhanced
Detected in many
brain:
63.2
cornea:
45.4
NUAK2
ENSSSCG00000038471
ENSG00000163545
NUAK family kinase 2
Low tissue specificity
Detected in all
OBSL1
ENSSSCG00000028052
ENSG00000124006
Obscurin like 1
Low tissue specificity
Detected in all
OLFML2A
ENSSSCG00000005593
ENSG00000185585
Olfactomedin-like protein 2A precursor
Tissue enhanced
Detected in all
salivary gland:
62.3
OLFML2B
ENSSSCG00000006345
ENSG00000162745
Olfactomedin like 2B
Tissue enhanced
Detected in many
smooth muscle:
70.2
OLR1
ENSSSCG00000000647
ENSG00000173391
Oxidized low-density lipoprotein receptor 1
Tissue enhanced
Detected in all
mesothelial tissue:
44.0
OR52B2
ENSSSCG00000014635
ENSG00000255307
Olfactory receptor family 52 subfamily B member 2
Tissue enhanced
Detected in many
breast:
8.1
cartilage:
9.8
fallopian tube:
11.8
OR52W1
ENSSSCG00000035041
ENSG00000175485
Olfactory receptor family 52 subfamily W member 1
Tissue enhanced
Detected in many
cartilage:
11.0
mesothelial tissue:
12.4
P2RX1
ENSSSCG00000022405
ENSG00000108405
Purinergic receptor P2X 1
Tissue enhanced
Detected in many
penis:
89.2
urinary bladder:
37.3
P2RY2
ENSSSCG00000040207
ENSG00000175591
P2Y purinoceptor 2
Tissue enhanced
Detected in many
vagus nerve:
52.1
P3H1
ENSSSCG00000023920
ENSG00000117385
Prolyl 3-hydroxylase 1
Tissue enhanced
Detected in all
cartilage:
122.2
lens:
87.8
P4HA1
ENSSSCG00000010292
ENSG00000122884
Prolyl 4-hydroxylase subunit alpha-1 precursor
Tissue enhanced
Detected in all
lens:
52.4
P4HB
ENSSSCG00000039148
ENSG00000185624
Prolyl 4-hydroxylase subunit beta
Low tissue specificity
Detected in all
PAM
ENSSSCG00000014184
ENSG00000145730
Peptidylglycine alpha-amidating monooxygenase
Tissue enhanced
Detected in all
cartilage:
159.1
heart:
115.9
PANX3
ENSSSCG00000015194
ENSG00000154143
Pannexin 3
Tissue enriched
Detected in some
cartilage:
16.8
PAPPA
ENSSSCG00000005498
ENSG00000182752
Pappalysin 1
Tissue enhanced
Detected in many
cartilage:
64.8
PAPSS1
ENSSSCG00000031901
ENSG00000138801
3'-phosphoadenosine 5'-phosphosulfate synthase 1
Tissue enhanced
Detected in all
cartilage:
53.4
PAWR
ENSSSCG00000036560
ENSG00000177425
Pro-apoptotic WT1 regulator
Low tissue specificity
Detected in many
PCDH1
ENSSSCG00000022289
ENSG00000156453
Protocadherin 1
Low tissue specificity
Detected in many
PCDH17
ENSSSCG00000009446
ENSG00000118946
Protocadherin 17
Tissue enhanced
Detected in many
brain:
36.9
PCDH19
ENSSSCG00000012479
ENSG00000165194
Protocadherin 19
Tissue enhanced
Detected in many
lens:
38.0
PCDHB6
ENSSSCG00000024873
ENSG00000113211
Protocadherin beta 6
Tissue enhanced
Detected in all
cartilage:
21.9
PCDHGA2
ENSSSCG00000031384
ENSG00000081853
Protocadherin gamma subfamily A, 2
Tissue enhanced
Detected in many
pituitary gland:
15.5
PCOLCE
ENSSSCG00000027466
ENSG00000106333
Procollagen C-endopeptidase enhancer
Tissue enhanced
Detected in many
cartilage:
123.2
synovial tissue:
132.1
PCSK6
ENSSSCG00000005785
ENSG00000140479
Proprotein convertase subtilisin/kexin type 6
Tissue enhanced
Detected in many
brain:
47.5
liver:
57.1
synovial tissue:
32.3
PDE1A
ENSSSCG00000023924
ENSG00000115252
Phosphodiesterase 1A
Tissue enhanced
Detected in many
brain:
31.9
thyroid gland:
38.6
PDE2A
ENSSSCG00000029388
ENSG00000186642
Phosphodiesterase 2A
Tissue enhanced
Detected in many
brain:
54.7
PDE3A
ENSSSCG00000028662
ENSG00000172572
CGMP-inhibited 3',5'-cyclic phosphodiesterase A
Tissue enhanced
Detected in many
heart:
78.3
PDE7A
ENSSSCG00000006218
ENSG00000205268
Phosphodiesterase 7A
Tissue enhanced
Detected in all
cartilage:
51.4
PDGFB
ENSSSCG00000033327
ENSG00000100311
Platelet derived growth factor subunit B
Low tissue specificity
Detected in many
PDGFRA
ENSSSCG00000008841
ENSG00000134853
Platelet-derived growth factor receptor alpha precursor
Tissue enhanced
Detected in all
cartilage:
67.5
ovary:
55.7
PDLIM1
ENSSSCG00000010493
ENSG00000107438
PDZ and LIM domain protein 1
Low tissue specificity
Detected in many
PDXP
ENSSSCG00000034632
ENSG00000241360
Pyridoxal phosphatase
Tissue enhanced
Detected in many
brain:
33.1
PDZRN4
ENSSSCG00000000791
ENSG00000165966
PDZ domain containing ring finger 4
Tissue enhanced
Detected in many
choroid plexus:
19.5
skin:
31.0
smooth muscle:
23.3
PEAR1
ENSSSCG00000006463
ENSG00000187800
Platelet endothelial aggregation receptor 1
Low tissue specificity
Detected in all
PECAM1
ENSSSCG00000017277
ENSG00000261371
Platelet endothelial cell adhesion molecule precursor
Tissue enhanced
Detected in many
cartilage:
100.2
PER2
ENSSSCG00000016338
ENSG00000132326
Period circadian regulator 2
Low tissue specificity
Detected in all
PFKFB3
ENSSSCG00000011133
ENSG00000170525
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tissue enhanced
Detected in many
cartilage:
45.0
kidney:
49.1
skeletal muscle:
57.0
PGK1
ENSSSCG00000012440
ENSG00000102144
Phosphoglycerate kinase 1
Tissue enhanced
Detected in all
skeletal muscle:
116.8
PGM5
ENSSSCG00000005243
ENSG00000154330
Phosphoglucomutase 5
Tissue enhanced
Detected in many
ductus deferens:
87.8
smooth muscle:
116.8
urinary bladder:
103.9
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