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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
UPP1
ENSSSCG00000030388
ENSG00000183696
Uridine phosphorylase 1
Tissue enhanced
Detected in many
male glands:
66.1
mouth:
19.9
USP18
ENSSSCG00000000774
ENSG00000161133,ENSG00000184979
Ubl carboxyl-terminal hydrolase 18
Low tissue specificity
Detected in many
USP27X
ENSSSCG00000012305
ENSG00000273820
Ubiquitin specific peptidase 27, X-linked
Tissue enhanced
Detected in many
adrenal gland:
17.8
brain:
19.9
pituitary gland:
17.4
USP3
ENSSSCG00000028737
ENSG00000140455
Ubiquitin specific peptidase 3
Low tissue specificity
Detected in all
USP31
ENSSSCG00000030424
ENSG00000103404
Ubiquitin specific peptidase 31
Tissue enhanced
Detected in all
brain:
29.7
USP45
ENSSSCG00000004351
ENSG00000123552
Ubiquitin specific peptidase 45
Low tissue specificity
Detected in all
USP54
ENSSSCG00000010302
ENSG00000166348
Ubiquitin specific peptidase 54
Tissue enhanced
Detected in all
brain:
41.8
male glands:
45.2
UST
ENSSSCG00000028974
ENSG00000111962
Uronyl 2-sulfotransferase
Tissue enhanced
Detected in many
lymphoid tissue:
41.2
UTRN
ENSSSCG00000004123
ENSG00000152818
Utrophin
Low tissue specificity
Detected in all
VAMP1
ENSSSCG00000000703
ENSG00000139190
Vesicle associated membrane protein 1
Tissue enriched
Detected in many
brain:
145.7
VAMP3
ENSSSCG00000035376
ENSG00000049245
Vesicle associated membrane protein 3
Low tissue specificity
Detected in all
VAMP8
ENSSSCG00000022820
ENSG00000118640
Vesicle associated membrane protein 8
Low tissue specificity
Detected in all
VASH2
ENSSSCG00000015589
ENSG00000143494
Vasohibin 2
Tissue enhanced
Detected in many
testis:
40.0
VAT1
ENSSSCG00000024059
ENSG00000108828
Vesicle amine transport 1
Low tissue specificity
Detected in all
VAT1L
ENSSSCG00000002696
ENSG00000171724
Vesicle amine transport 1 like
Group enriched
Detected in many
adrenal gland:
98.1
brain:
32.7
choroid plexus:
77.6
ovary:
32.6
VAV2
ENSSSCG00000005743
ENSG00000160293
Vav guanine nucleotide exchange factor 2
Low tissue specificity
Detected in many
VCAM1
ENSSSCG00000006862
ENSG00000162692
Vascular cell adhesion protein 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
VCL
ENSSSCG00000010313
ENSG00000035403
Vinculin
Tissue enhanced
Detected in all
smooth muscle:
130.6
VDR
ENSSSCG00000020864
ENSG00000111424
Vitamin D3 receptor
Tissue enhanced
Detected in many
large intestine:
34.3
skin:
35.4
small intestine:
43.2
VEGFC
ENSSSCG00000015770
ENSG00000150630
Vascular endothelial growth factor C
Tissue enhanced
Detected in many
thyroid gland:
33.4
VGF
ENSSSCG00000039053
ENSG00000128564
VGF nerve growth factor inducible
Group enriched
Detected in some
pineal gland:
190.9
pituitary gland:
51.7
VGLL3
ENSSSCG00000032398
ENSG00000206538
Transcription cofactor vestigial-like protein 3
Tissue enhanced
Detected in many
mesothelial tissue:
30.9
vagus nerve:
39.6
VIM
ENSSSCG00000011033
ENSG00000026025
Vimentin
Tissue enhanced
Detected in all
lens:
729.5
VIPR2
ENSSSCG00000016403
ENSG00000106018
Vasoactive intestinal polypeptide receptor 2 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
50.2
VIT
ENSSSCG00000008501
ENSG00000205221
Vitrin
Group enriched
Detected in many
cartilage:
112.4
lens:
52.1
VOPP1
ENSSSCG00000032734
ENSG00000154978
VOPP1, WBP1/VOPP1 family member
Tissue enhanced
Detected in many
retina:
73.7
VPS50
ENSSSCG00000022982
ENSG00000004766
VPS50, EARP/GARPII complex subunit
Tissue enhanced
Detected in all
brain:
47.6
VRK2
ENSSSCG00000008395
ENSG00000028116
Vaccinia related kinase 2
Low tissue specificity
Detected in all
VSIG10
ENSSSCG00000009852
ENSG00000176834
V-set and immunoglobulin domain containing 10
Low tissue specificity
Detected in all
VSIG10L
ENSSSCG00000003228
ENSG00000186806
V-set and immunoglobulin domain containing 10 like
Group enriched
Detected in some
mouth:
30.5
retina:
31.0
VSIG4
ENSSSCG00000035170
ENSG00000155659
V-set and immunoglobulin domain-containing protein 4 precursor
Tissue enhanced
Detected in many
adipose tissue:
25.2
synovial tissue:
65.3
VSIR
ENSSSCG00000010280
ENSG00000107738
V-set immunoregulatory receptor
Low tissue specificity
Detected in many
VSNL1
ENSSSCG00000008615
ENSG00000163032
Visinin like 1
Group enriched
Detected in some
brain:
96.6
pineal gland:
24.9
VSTM2L
ENSSSCG00000007338
ENSG00000132821
V-set and transmembrane domain containing 2 like
Tissue enriched
Detected in some
brain:
42.9
VSTM4
ENSSSCG00000010385
ENSG00000165633
V-set and transmembrane domain containing 4
Tissue enhanced
Detected in all
choroid plexus:
44.0
VSTM5
ENSSSCG00000014950
ENSG00000214376
V-set and transmembrane domain containing 5
Tissue enhanced
Detected in many
brain:
9.3
VWA1
ENSSSCG00000003344
ENSG00000179403
Von Willebrand factor A domain containing 1
Tissue enhanced
Detected in many
vagus nerve:
105.0
VWA3A
ENSSSCG00000025266
ENSG00000175267
Von Willebrand factor A domain containing 3A
Tissue enhanced
Detected in some
choroid plexus:
20.2
fallopian tube:
45.5
lung:
19.6
upper respiratory system:
22.5
VWA5B1
ENSSSCG00000003503
ENSG00000158816
Von Willebrand factor A domain containing 5B1
Group enriched
Detected in some
choroid plexus:
41.3
testis:
13.3
VWA5B2
ENSSSCG00000026185
ENSG00000145198
Von Willebrand factor A domain containing 5B2
Group enriched
Detected in some
adrenal gland:
56.0
brain:
16.4
VWA7
ENSSSCG00000036796
ENSG00000204396
Von Willebrand factor A domain-containing protein 7 precursor
Tissue enhanced
Detected in many
thyroid gland:
23.3
VWC2
ENSSSCG00000015626
ENSG00000188730
Von Willebrand factor C domain containing 2
Group enriched
Detected in some
brain:
17.8
cervix:
5.8
pituitary gland:
13.2
retina:
8.3
VWC2L
ENSSSCG00000016168
ENSG00000174453
Von Willebrand factor C domain containing protein 2 like
Tissue enriched
Detected in some
brain:
14.1
WASF2
ENSSSCG00000003577
ENSG00000158195
Wiskott-Aldrich syndrome protein family member 2
Low tissue specificity
Detected in all
WDR34
ENSSSCG00000005655
ENSG00000119333
WD repeat domain 34
Low tissue specificity
Detected in all
WDR37
ENSSSCG00000029602
ENSG00000047056
WD repeat-containing protein 37
Low tissue specificity
Detected in all
WDR47
ENSSSCG00000006840
ENSG00000085433
WD repeat domain 47
Tissue enhanced
Detected in all
brain:
34.0
WDR49
ENSSSCG00000011738
ENSG00000174776
WD repeat domain 49
Tissue enhanced
Detected in some
brain:
8.7
fallopian tube:
39.1
upper respiratory system:
19.4
vagus nerve:
8.8
WDR63
ENSSSCG00000006950
ENSG00000162643
WD repeat domain 63
Tissue enhanced
Detected in all
choroid plexus:
39.6
fallopian tube:
50.5
WDR78
ENSSSCG00000022305
ENSG00000152763
WD repeat domain 78
Tissue enhanced
Detected in some
choroid plexus:
23.4
fallopian tube:
36.0
upper respiratory system:
16.5
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