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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
WDR86
ENSSSCG00000016437
ENSG00000187260
WD repeat domain 86
Low tissue specificity
Detected in many
WFDC2
ENSSSCG00000033003
ENSG00000101443
WAP four-disulfide core domain protein 2
Tissue enhanced
Detected in many
endometrium:
69.1
upper respiratory system:
173.1
WFIKKN2
ENSSSCG00000017557
ENSG00000173714
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
Tissue enriched
Detected in some
choroid plexus:
161.4
WFS1
ENSSSCG00000032452
ENSG00000109501
Wolframin ER transmembrane glycoprotein
Tissue enriched
Detected in all
brain:
93.7
WHRN
ENSSSCG00000005490
ENSG00000095397
Whirlin
Tissue enhanced
Detected in all
lymphoid tissue:
29.4
WIF1
ENSSSCG00000030998
ENSG00000156076
Wnt inhibitory factor 1 precursor
Tissue enriched
Detected in some
cartilage:
317.7
WIPF1
ENSSSCG00000027348
ENSG00000115935
WAS/WASL interacting protein family member 1
Low tissue specificity
Detected in all
WIPI1
ENSSSCG00000017260
ENSG00000070540
WD repeat domain phosphoinositide-interacting protein 1
Tissue enhanced
Detected in all
male glands:
52.0
WISP1
ENSSSCG00000005946
ENSG00000104415
WNT1 inducible signaling pathway protein 1
Tissue enhanced
Detected in many
cartilage:
33.9
WLS
ENSSSCG00000003795
ENSG00000116729
Wntless Wnt ligand secretion mediator
Tissue enhanced
Detected in many
choroid plexus:
66.6
lens:
73.9
pineal gland:
103.5
WNK2
ENSSSCG00000034154
ENSG00000165238
WNK lysine deficient protein kinase 2
Tissue enhanced
Detected in many
male glands:
78.4
WNK4
ENSSSCG00000017387
ENSG00000126562
WNK lysine deficient protein kinase 4
Tissue enhanced
Detected in many
cartilage:
36.2
kidney:
46.7
penis:
29.3
vagus nerve:
36.8
WNT16
ENSSSCG00000016617
ENSG00000002745
Wnt family member 16
Tissue enhanced
Detected in many
adipose tissue:
18.3
cornea:
31.4
skin:
31.6
WNT2
ENSSSCG00000016628
ENSG00000105989
Wnt family member 2
Tissue enhanced
Detected in many
cervix:
34.9
cornea:
18.2
endometrium:
13.8
WNT3
ENSSSCG00000017317
ENSG00000108379
Wnt family member 3
Group enriched
Detected in some
cornea:
38.0
skin:
26.4
testis:
17.9
WNT5A
ENSSSCG00000035859
ENSG00000114251
Wnt family member 5A
Tissue enhanced
Detected in many
cornea:
43.9
urinary bladder:
38.3
WNT6
ENSSSCG00000036932
ENSG00000115596
Wnt family member 6
Tissue enhanced
Detected in many
brain:
13.8
vagus nerve:
24.4
WNT7A
ENSSSCG00000039010
ENSG00000154764
Wnt family member 7A
Tissue enriched
Detected in some
lens:
157.5
WNT7B
ENSSSCG00000027365
ENSG00000188064
Wnt family member 7B
Tissue enhanced
Detected in many
cornea:
37.3
kidney:
30.4
lens:
49.8
skin:
17.5
WNT9A
ENSSSCG00000024671
ENSG00000143816
Wnt family member 9A
Low tissue specificity
Detected in many
WSB2
ENSSSCG00000009853
ENSG00000176871
WD repeat and SOCS box containing 2
Tissue enhanced
Detected in all
brain:
95.4
lens:
82.2
WSCD1
ENSSSCG00000017894
ENSG00000179314
WSC domain containing 1
Tissue enhanced
Detected in many
brain:
41.5
pineal gland:
18.9
WSCD2
ENSSSCG00000039261
ENSG00000075035
WSC domain containing 2
Tissue enhanced
Detected in many
brain:
30.4
cartilage:
24.1
choroid plexus:
46.3
WWC1
ENSSSCG00000035456
ENSG00000113645
WW and C2 domain containing 1
Tissue enhanced
Detected in many
kidney:
46.5
XKR6
ENSSSCG00000009693
ENSG00000171044
XK related 6
Tissue enhanced
Detected in all
brain:
25.1
XKR7
ENSSSCG00000007238
ENSG00000260903
XK related 7
Tissue enriched
Detected in some
brain:
21.8
YAP1
ENSSSCG00000031429
ENSG00000137693
Yes associated protein 1
Low tissue specificity
Detected in all
YBX3
ENSSSCG00000000633
ENSG00000060138
Y-box binding protein 3
Tissue enhanced
Detected in all
skeletal muscle:
405.5
YDJC
ENSSSCG00000010087
ENSG00000161179
Carbohydrate deacetylase
Low tissue specificity
Detected in many
YES1
ENSSSCG00000031942
ENSG00000176105
YES proto-oncogene 1, Src family tyrosine kinase
Low tissue specificity
Detected in all
YIPF7
ENSSSCG00000008806
ENSG00000177752
Yip1 domain family member 7
Group enriched
Detected in some
heart:
32.5
skeletal muscle:
34.9
YJEFN3
ENSSSCG00000013935
ENSG00000250067
YjeF N-terminal domain containing 3
Tissue enhanced
Detected in some
brain:
13.0
pineal gland:
14.5
pituitary gland:
7.0
YPEL2
ENSSSCG00000035400
ENSG00000175155
Yippee like 2
Tissue enhanced
Detected in all
lens:
54.0
YPEL4
ENSSSCG00000037892
ENSG00000166793
Yippee like 4
Tissue enhanced
Detected in many
brain:
22.0
YWHAH
ENSSSCG00000010035
ENSG00000128245
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta
Tissue enhanced
Detected in all
brain:
69.9
lens:
98.4
pineal gland:
61.0
ZBBX
ENSSSCG00000023393
ENSG00000169064
Zinc finger B-box domain containing
Tissue enhanced
Detected in some
fallopian tube:
35.5
testis:
54.0
ZBP1
ENSSSCG00000007508
ENSG00000124256
Z-DNA-binding protein 1
Tissue enhanced
Detected in many
small intestine:
29.8
stomach:
33.2
ZBTB16
ENSSSCG00000030095
ENSG00000109906
Zinc finger and BTB domain containing 16
Tissue enhanced
Detected in many
skeletal muscle:
73.1
ZBTB18
ENSSSCG00000035213
ENSG00000179456
Zinc finger and BTB domain containing 18
Tissue enhanced
Detected in all
brain:
82.4
male glands:
34.1
ZBTB46
ENSSSCG00000040388
ENSG00000130584
Zinc finger and BTB domain containing 46
Tissue enhanced
Detected in many
cartilage:
17.7
ZBTB7C
ENSSSCG00000028076
ENSG00000184828
Zinc finger and BTB domain containing 7C
Tissue enhanced
Detected in many
adrenal gland:
38.4
ZC3H12B
ENSSSCG00000012367
ENSG00000102053
Zinc finger CCCH-type containing 12B
Tissue enhanced
Detected in some
brain:
10.0
choroid plexus:
7.1
ZCCHC24
ENSSSCG00000033074
ENSG00000165424
Zinc finger CCHC-type containing 24
Low tissue specificity
Detected in all
ZDHHC20
ENSSSCG00000026744
ENSG00000180776
Zinc finger DHHC-type containing 20
Low tissue specificity
Detected in all
ZDHHC21
ENSSSCG00000035730
ENSG00000175893
Zinc finger DHHC-type containing 21
Tissue enhanced
Detected in many
brain:
24.9
ZDHHC9
ENSSSCG00000012653
ENSG00000188706
Zinc finger DHHC-type containing 9
Tissue enhanced
Detected in all
brain:
74.7
ZEB2
ENSSSCG00000021343
ENSG00000169554
Zinc finger E-box binding homeobox 2
Tissue enhanced
Detected in all
brain:
105.4
ZFP36
ENSSSCG00000028056
ENSG00000128016
Tristetraprolin
Tissue enhanced
Detected in many
aorta:
143.1
ZFP36L1
ENSSSCG00000028304
ENSG00000185650
ZFP36 ring finger protein like 1
Low tissue specificity
Detected in many
ZFP36L2
ENSSSCG00000038549
ENSG00000152518
ZFP36 ring finger protein like 2
Low tissue specificity
Detected in all
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