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Keyword
Chromosome
1
2
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7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TTC23L
ENSSSCG00000016825
ENSG00000205838
Tetratricopeptide repeat domain 23 like
Tissue enhanced
Detected in many
epididymis:
37.3
pineal gland:
20.4
testis:
33.2
upper respiratory system:
21.6
TTC39B
ENSSSCG00000005186
ENSG00000155158
Tetratricopeptide repeat domain 39B
Low tissue specificity
Detected in many
TTC39C
ENSSSCG00000003710
ENSG00000168234
Tetratricopeptide repeat domain 39C
Tissue enhanced
Detected in all
liver:
43.1
TTC6
ENSSSCG00000001939
ENSG00000139865
Tetratricopeptide repeat domain 6
Tissue enhanced
Detected in some
brain:
17.5
testis:
24.4
upper respiratory system:
7.5
TTC7B
ENSSSCG00000002436
ENSG00000165914
Tetratricopeptide repeat domain 7B
Tissue enhanced
Detected in all
epididymis:
55.7
male glands:
46.7
TTC9
ENSSSCG00000020701
ENSG00000133985
Tetratricopeptide repeat domain 9
Tissue enhanced
Detected in many
brain:
22.7
choroid plexus:
54.1
TTLL7
ENSSSCG00000003760
ENSG00000137941
Tubulin tyrosine ligase like 7
Tissue enhanced
Detected in many
brain:
61.5
smooth muscle:
23.3
TTLL9
ENSSSCG00000007236
ENSG00000131044
Tubulin tyrosine ligase like 9
Tissue enhanced
Detected in some
fallopian tube:
24.7
lung:
10.2
testis:
24.9
upper respiratory system:
14.6
TTPAL
ENSSSCG00000036684
ENSG00000124120
Alpha tocopherol transfer protein like
Low tissue specificity
Detected in all
TTR
ENSSSCG00000023686
ENSG00000118271
Transthyretin
Tissue enriched
Detected in some
choroid plexus:
1387.5
TTYH2
ENSSSCG00000017238
ENSG00000141540
Tweety family member 2
Tissue enhanced
Detected in all
brain:
98.3
TTYH3
ENSSSCG00000007565
ENSG00000136295
Tweety family member 3
Tissue enhanced
Detected in all
stomach:
68.2
TUB
ENSSSCG00000014581
ENSG00000166402
Tubby bipartite transcription factor
Tissue enhanced
Detected in many
stomach:
57.3
TUBA4A
ENSSSCG00000016216
ENSG00000127824
Tubulin alpha 4a
Tissue enhanced
Detected in many
brain:
63.2
skeletal muscle:
71.1
TUBA8
ENSSSCG00000000773
ENSG00000183785
Tubulin alpha 8
Tissue enhanced
Detected in all
skeletal muscle:
43.0
testis:
37.4
TUBB3
ENSSSCG00000002639
ENSG00000258947
Tubulin beta 3 class III
Tissue enriched
Detected in some
brain:
69.0
TUBB4A
ENSSSCG00000013545
ENSG00000104833
Tubulin beta 4A class IVa
Tissue enriched
Detected in some
brain:
146.9
TUBB6
ENSSSCG00000038992
ENSG00000176014
Tubulin beta 6 class V
Low tissue specificity
Detected in all
TUFT1
ENSSSCG00000006620
ENSG00000143367
Tuftelin 1
Tissue enhanced
Detected in many
cornea:
46.7
TULP1
ENSSSCG00000035972
ENSG00000112041
Tubby like protein 1
Group enriched
Detected in some
pineal gland:
52.1
retina:
107.3
TUSC3
ENSSSCG00000021988
ENSG00000104723
Tumor suppressor candidate 3
Tissue enhanced
Detected in many
epididymis:
41.1
pineal gland:
61.3
pituitary gland:
43.7
TVP23A
ENSSSCG00000027101
ENSG00000166676
Trans-golgi network vesicle protein 23 homolog A
Tissue enhanced
Detected in many
brain:
20.6
TWIST1
ENSSSCG00000015370
ENSG00000122691
Twist family bHLH transcription factor 1
Tissue enhanced
Detected in many
adipose tissue:
31.3
dura mater:
47.7
TWSG1
ENSSSCG00000039663
ENSG00000128791
Twisted gastrulation BMP signaling modulator 1
Low tissue specificity
Detected in all
TXNIP
ENSSSCG00000031262
ENSG00000265972
Thioredoxin-interacting protein
Low tissue specificity
Detected in all
TYMS
ENSSSCG00000040678
ENSG00000176890
Thymidylate synthase
Tissue enhanced
Detected in many
lymphoid tissue:
29.7
upper respiratory system:
23.1
TYROBP
ENSSSCG00000002919
ENSG00000011600
TYRO protein tyrosine kinase-binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
70.7
synovial tissue:
61.1
UACA
ENSSSCG00000004973
ENSG00000137831
Uveal autoantigen with coiled-coil domains and ankyrin repeats
Low tissue specificity
Detected in all
UBAP1L
ENSSSCG00000035506
ENSG00000246922
Ubiquitin associated protein 1 like
Group enriched
Detected in many
brain:
21.3
pineal gland:
13.8
retina:
50.3
UBASH3B
ENSSSCG00000015136
ENSG00000154127
Ubiquitin associated and SH3 domain containing B
Tissue enhanced
Detected in all
lymphoid tissue:
59.2
UBE2T
ENSSSCG00000010923
ENSG00000077152
Ubiquitin conjugating enzyme E2 T
Low tissue specificity
Detected in many
UBE2U
ENSSSCG00000003810
ENSG00000177414
Ubiquitin conjugating enzyme E2 U (putative)
Tissue enhanced
Detected in some
choroid plexus:
28.4
fallopian tube:
32.1
testis:
44.0
UBXN10
ENSSSCG00000003498
ENSG00000162543
UBX domain protein 10
Tissue enhanced
Detected in some
choroid plexus:
18.4
fallopian tube:
48.7
lung:
16.0
testis:
19.2
upper respiratory system:
41.9
UBXN11
ENSSSCG00000033546
ENSG00000158062
UBX domain protein 11
Tissue enhanced
Detected in many
lymphoid tissue:
38.5
UCHL1
ENSSSCG00000022945
ENSG00000154277
Ubiquitin carboxyl-terminal hydrolase isozyme L1
Tissue enhanced
Detected in many
brain:
100.1
lens:
44.2
pineal gland:
29.0
pituitary gland:
33.0
UCMA
ENSSSCG00000038864
ENSG00000165623
Upper zone of growth plate and cartilage matrix associated
Tissue enriched
Detected in some
brain:
30.6
UCP2
ENSSSCG00000014833
ENSG00000175567
Mitochondrial uncoupling protein 2
Tissue enhanced
Detected in many
lens:
49.1
lung:
55.0
lymphoid tissue:
69.1
upper respiratory system:
61.4
UGT8
ENSSSCG00000031904
ENSG00000174607
2-hydroxyacylsphingosine 1-beta-galactosyltransferase
Group enriched
Detected in many
brain:
109.4
vagus nerve:
33.2
UHRF1BP1L
ENSSSCG00000026697
ENSG00000111647
UHRF1 binding protein 1 like
Low tissue specificity
Detected in all
UNC119
ENSSSCG00000017761
ENSG00000109103
Unc-119 lipid binding chaperone
Group enriched
Detected in many
pineal gland:
98.7
retina:
195.7
UNC13A
ENSSSCG00000013880
ENSG00000130477
Unc-13 homolog A
Tissue enhanced
Detected in some
brain:
33.1
cornea:
9.0
pituitary gland:
12.7
retina:
12.2
UNC13B
ENSSSCG00000005305
ENSG00000198722
Unc-13 homolog B
Low tissue specificity
Detected in all
UNC13C
ENSSSCG00000004614
ENSG00000137766
Unc-13 homolog C
Tissue enriched
Detected in many
brain:
98.8
UNC5B
ENSSSCG00000010276
ENSG00000107731
Netrin receptor UNC5B precursor
Tissue enhanced
Detected in many
male glands:
52.4
UNC5C
ENSSSCG00000021874
ENSG00000182168
Unc-5 netrin receptor C
Tissue enhanced
Detected in many
brain:
24.2
cornea:
34.2
UNC5D
ENSSSCG00000015830
ENSG00000156687
Unc-5 netrin receptor D
Tissue enhanced
Detected in many
brain:
18.0
kidney:
15.8
UNC80
ENSSSCG00000016153
ENSG00000144406
Unc-80 homolog, NALCN channel complex subunit
Tissue enhanced
Detected in some
brain:
32.7
pineal gland:
16.0
pituitary gland:
22.1
UNC93B1
ENSSSCG00000012893
ENSG00000110057
Unc-93 homolog B1, TLR signaling regulator
Low tissue specificity
Detected in all
UNCX
ENSSSCG00000007555
ENSG00000164853
UNC homeobox
Tissue enriched
Detected in some
brain:
21.1
UPK1B
ENSSSCG00000011904
ENSG00000114638
Uroplakin-1b
Group enriched
Detected in many
adipose tissue:
31.5
cornea:
72.4
mesothelial tissue:
47.5
urinary bladder:
44.3
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