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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TLR3
ENSSSCG00000015801
ENSG00000164342
Toll-like receptor 3 precursor
Low tissue specificity
Detected in all
TLR4
ENSSSCG00000005503
ENSG00000136869
Toll-like receptor 4 isoform 1 precursor
Tissue enhanced
Detected in many
male glands:
40.1
TLX3
ENSSSCG00000016999
ENSG00000164438
T cell leukemia homeobox 3
Tissue enriched
Detected in some
brain:
33.8
TM4SF1
ENSSSCG00000033018
ENSG00000169908
Transmembrane 4 L six family member 1
Low tissue specificity
Detected in many
TMC6
ENSSSCG00000032562
ENSG00000141524
Transmembrane channel like 6
Tissue enhanced
Detected in many
lymphoid tissue:
49.7
stomach:
34.2
TMC7
ENSSSCG00000007866
ENSG00000170537
Transmembrane channel like 7
Tissue enhanced
Detected in all
brain:
53.1
testis:
30.0
TMCO4
ENSSSCG00000027489
ENSG00000162542
Transmembrane and coiled-coil domains 4
Low tissue specificity
Detected in many
TMED10
ENSSSCG00000035684
ENSG00000170348
Transmembrane p24 trafficking protein 10
Low tissue specificity
Detected in all
TMEFF2
ENSSSCG00000016064
ENSG00000144339
Transmembrane protein with EGF like and two follistatin like domains 2
Tissue enriched
Detected in many
brain:
33.4
TMEM100
ENSSSCG00000017607
ENSG00000166292
Transmembrane protein 100
Tissue enhanced
Detected in many
dura mater:
47.2
TMEM114
ENSSSCG00000007915
ENSG00000232258
Transmembrane protein 114
Tissue enhanced
Detected in some
brain:
15.3
pineal gland:
4.0
TMEM116
ENSSSCG00000009893
ENSG00000198270
Transmembrane protein 116
Tissue enhanced
Detected in many
kidney:
38.5
lung:
28.8
salivary gland:
23.8
stomach:
18.5
TMEM117
ENSSSCG00000000801
ENSG00000139173
Transmembrane protein 117
Group enriched
Detected in many
brain:
38.1
lens:
64.5
TMEM120B
ENSSSCG00000009808
ENSG00000188735
Transmembrane protein 120B
Low tissue specificity
Detected in all
TMEM125
ENSSSCG00000024697
ENSG00000179178
Transmembrane protein 125
Tissue enhanced
Detected in many
brain:
30.3
epididymis:
24.1
kidney:
22.3
male glands:
27.0
TMEM130
ENSSSCG00000007605
ENSG00000166448
Transmembrane protein 130
Tissue enhanced
Detected in some
brain:
55.0
pineal gland:
11.4
pituitary gland:
19.3
TMEM132A
ENSSSCG00000013113
ENSG00000006118
Transmembrane protein 132A
Tissue enhanced
Detected in all
brain:
35.1
TMEM132B
ENSSSCG00000009754
ENSG00000139364
Transmembrane protein 132B
Tissue enriched
Detected in some
brain:
23.7
TMEM132C
ENSSSCG00000009753
ENSG00000181234
Transmembrane protein 132C
Tissue enhanced
Detected in all
cornea:
23.1
TMEM134
ENSSSCG00000012905
ENSG00000172663
Transmembrane protein 134
Low tissue specificity
Detected in all
TMEM144
ENSSSCG00000008874
ENSG00000164124
Transmembrane protein 144
Tissue enriched
Detected in many
brain:
46.2
TMEM145
ENSSSCG00000003022
ENSG00000167619
Transmembrane protein 145
Tissue enhanced
Detected in many
brain:
36.4
TMEM150C
ENSSSCG00000026729
ENSG00000249242
Transmembrane protein 150C
Tissue enriched
Detected in all
epididymis:
107.5
TMEM151A
ENSSSCG00000012952
ENSG00000179292
Transmembrane protein 151A
Tissue enhanced
Detected in many
brain:
30.6
mesothelial tissue:
12.6
TMEM154
ENSSSCG00000009012
ENSG00000170006
Transmembrane protein 154
Tissue enhanced
Detected in many
lymphoid tissue:
26.3
male glands:
49.1
TMEM158
ENSSSCG00000030575
ENSG00000249992
Transmembrane protein 158 (gene/pseudogene)
Tissue enhanced
Detected in many
brain:
30.7
TMEM160
ENSSSCG00000003109
ENSG00000130748
Transmembrane protein 160
Tissue enhanced
Detected in all
brain:
28.4
TMEM163
ENSSSCG00000015700
ENSG00000152128
Transmembrane protein 163
Tissue enhanced
Detected in many
brain:
21.8
heart:
8.5
lymphoid tissue:
9.7
TMEM164
ENSSSCG00000037670
ENSG00000157600
Transmembrane protein 164
Tissue enhanced
Detected in all
heart:
50.6
male glands:
56.1
TMEM176A
ENSSSCG00000016443
ENSG00000002933
Transmembrane protein 176A
Tissue enhanced
Detected in many
gallbladder:
91.7
TMEM176B
ENSSSCG00000016444
ENSG00000106565
Transmembrane protein 176B
Tissue enhanced
Detected in many
gallbladder:
66.8
TMEM179
ENSSSCG00000039537
ENSG00000258986
Transmembrane protein 179
Group enriched
Detected in some
adrenal gland:
7.2
brain:
22.7
pineal gland:
7.7
pituitary gland:
7.9
retina:
6.8
TMEM189
ENSSSCG00000027287
ENSG00000240849
Transmembrane protein 189
Tissue enhanced
Detected in all
ovary:
80.9
TMEM200A
ENSSSCG00000004201
ENSG00000164484
Transmembrane protein 200A
Tissue enhanced
Detected in many
brain:
16.9
cervix:
24.6
ovary:
14.0
TMEM200C
ENSSSCG00000039627
ENSG00000206432
Transmembrane protein 200C
Tissue enhanced
Detected in many
ductus deferens:
17.8
lens:
27.1
pineal gland:
22.1
TMEM205
ENSSSCG00000013622
ENSG00000105518
Transmembrane protein 205
Tissue enhanced
Detected in all
adrenal gland:
74.8
TMEM229A
ENSSSCG00000016600
ENSG00000234224
Transmembrane protein 229A
Tissue enhanced
Detected in some
brain:
15.1
ovary:
25.4
TMEM229B
ENSSSCG00000023791
ENSG00000198133
Transmembrane protein 229B
Tissue enhanced
Detected in many
liver:
55.5
TMEM240
ENSSSCG00000038530
ENSG00000205090
Transmembrane protein 240
Tissue enhanced
Detected in many
brain:
11.1
TMEM246
ENSSSCG00000029687
ENSG00000165152
Transmembrane protein 246
Low tissue specificity
Detected in many
TMEM25
ENSSSCG00000029395
ENSG00000149582
Transmembrane protein 25
Tissue enhanced
Detected in many
breast:
24.1
liver:
41.8
TMEM26
ENSSSCG00000023525
ENSG00000196932
Transmembrane protein 26
Tissue enhanced
Detected in some
brain:
24.4
ovary:
48.7
TMEM266
ENSSSCG00000001863
ENSG00000169758
Transmembrane protein 266
Tissue enhanced
Detected in many
brain:
37.6
TMEM30B
ENSSSCG00000005094
ENSG00000182107
Transmembrane protein 30B
Tissue enhanced
Detected in many
male glands:
56.3
TMEM35A
ENSSSCG00000012490
ENSG00000126950
Transmembrane protein 35A
Tissue enhanced
Detected in many
brain:
17.4
pineal gland:
20.4
pituitary gland:
11.3
TMEM38A
ENSSSCG00000013864
ENSG00000072954
Transmembrane protein 38A
Tissue enriched
Detected in many
skeletal muscle:
129.5
TMEM47
ENSSSCG00000024132
ENSG00000147027
Transmembrane protein 47
Tissue enhanced
Detected in all
brain:
37.2
lens:
37.9
TMEM52
ENSSSCG00000028530
ENSG00000178821
Transmembrane protein 52
Tissue enhanced
Detected in many
skeletal muscle:
98.9
TMEM59L
ENSSSCG00000013911
ENSG00000105696
Transmembrane protein 59-like precursor
Group enriched
Detected in many
brain:
64.7
pineal gland:
64.0
pituitary gland:
19.5
retina:
21.7
TMEM63A
ENSSSCG00000010854
ENSG00000196187
CSC1-like protein 1
Low tissue specificity
Detected in all
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