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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TMEM63C
ENSSSCG00000002398
ENSG00000165548
Transmembrane protein 63C
Tissue enhanced
Detected in many
brain:
33.6
TMEM74B
ENSSSCG00000035262
ENSG00000125895
Transmembrane protein 74B
Tissue enhanced
Detected in some
brain:
9.8
TMEM88B
ENSSSCG00000034013
ENSG00000205116
Transmembrane protein 88B
Tissue enriched
Detected in all
brain:
47.0
TMEM9
ENSSSCG00000027928
ENSG00000116857
Transmembrane protein 9
Low tissue specificity
Detected in many
TMEM98
ENSSSCG00000017727
ENSG00000006042
Transmembrane protein 98
Tissue enhanced
Detected in all
mesothelial tissue:
54.6
TMIE
ENSSSCG00000038857
ENSG00000181585
Transmembrane inner ear
Group enriched
Detected in some
brain:
23.0
pituitary gland:
30.2
TMPRSS15
ENSSSCG00000012019
ENSG00000154646
Enteropeptidase proprotein
Tissue enriched
Detected in some
small intestine:
51.5
TMPRSS5
ENSSSCG00000015049
ENSG00000166682
Transmembrane serine protease 5
Tissue enhanced
Detected in many
fallopian tube:
15.9
vagus nerve:
41.6
TMSB10
ENSSSCG00000008245
ENSG00000034510
Thymosin beta-10
Low tissue specificity
Detected in all
TMSB4X
ENSSSCG00000012119
ENSG00000205542
Thymosin beta-4 Hematopoietic system regulatory peptide
Low tissue specificity
Detected in all
TMTC1
ENSSSCG00000027447
ENSG00000133687
Transmembrane and tetratricopeptide repeat containing 1
Tissue enhanced
Detected in many
cartilage:
53.6
TMTC2
ENSSSCG00000024065
ENSG00000179104
Transmembrane and tetratricopeptide repeat containing 2
Low tissue specificity
Detected in many
TNC
ENSSSCG00000005494
ENSG00000041982
Tenascin precursor
Tissue enhanced
Detected in many
cartilage:
169.5
smooth muscle:
64.2
synovial tissue:
56.1
TNFAIP6
ENSSSCG00000023716
ENSG00000123610
Tumor necrosis factor-inducible gene 6 protein precursor
Tissue enhanced
Detected in many
mesothelial tissue:
15.2
synovial tissue:
30.4
TNFAIP8
ENSSSCG00000040617
ENSG00000145779
Tumor necrosis factor alpha-induced protein 8
Tissue enhanced
Detected in many
lymphoid tissue:
33.1
TNFAIP8L3
ENSSSCG00000031794
ENSG00000183578
TNF alpha induced protein 8 like 3
Tissue enhanced
Detected in many
cervix:
17.7
TNFRSF11B
ENSSSCG00000027762
ENSG00000164761
TNF receptor superfamily member 11b
Tissue enhanced
Detected in many
cartilage:
27.5
dura mater:
43.7
TNFRSF1B
ENSSSCG00000022208
ENSG00000028137
Tumor necrosis factor receptor superfamily member 1B precursor
Tissue enhanced
Detected in many
synovial tissue:
60.5
TNFRSF21
ENSSSCG00000001727
ENSG00000146072
TNF receptor superfamily member 21
Tissue enhanced
Detected in many
male glands:
130.1
stomach:
54.8
TNFRSF8
ENSSSCG00000003437
ENSG00000120949
TNF receptor superfamily member 8
Tissue enhanced
Detected in many
lung:
15.2
ovary:
33.7
TNFSF13
ENSSSCG00000036521
ENSG00000161955
Tumor necrosis factor ligand superfamily member 13
Tissue enhanced
Detected in many
choroid plexus:
27.5
upper respiratory system:
35.5
TNFSF13B
ENSSSCG00000009542
ENSG00000102524
Tumor necrosis factor ligand superfamily member 13B
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
small intestine:
37.3
stomach:
17.4
TNKS1BP1
ENSSSCG00000028527
ENSG00000149115
Tankyrase 1 binding protein 1
Low tissue specificity
Detected in all
TNMD
ENSSSCG00000012480
ENSG00000000005
Tenomodulin
Group enriched
Detected in some
brain:
27.8
choroid plexus:
33.0
dura mater:
43.7
TNNC1
ENSSSCG00000011441
ENSG00000114854
Troponin C, slow skeletal and cardiac muscles
Group enriched
Detected in some
heart:
332.4
skeletal muscle:
388.6
TNNC2
ENSSSCG00000007424
ENSG00000101470
Troponin C, skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
688.9
TNNT1
ENSSSCG00000025353
ENSG00000105048
Troponin T, slow skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
407.0
TNNT2
ENSSSCG00000023031
ENSG00000118194
Troponin T, cardiac muscle isoform 6
Tissue enriched
Detected in some
heart:
578.7
TNS2
ENSSSCG00000000263
ENSG00000111077
Tensin 2
Low tissue specificity
Detected in all
TOMM70
ENSSSCG00000011963
ENSG00000154174
Translocase of outer mitochondrial membrane 70
Tissue enhanced
Detected in all
brain:
62.1
TONSL
ENSSSCG00000025116
ENSG00000160949
Tonsoku like, DNA repair protein
Low tissue specificity
Detected in all
TOX
ENSSSCG00000006235
ENSG00000198846
Thymocyte selection associated high mobility group box
Tissue enhanced
Detected in many
lymphoid tissue:
54.8
stomach:
40.2
TOX2
ENSSSCG00000022202
ENSG00000124191
TOX high mobility group box family member 2
Group enriched
Detected in many
brain:
14.4
lens:
50.9
lymphoid tissue:
36.0
pituitary gland:
19.8
TOX3
ENSSSCG00000002835
ENSG00000103460
TOX high mobility group box family member 3
Tissue enhanced
Detected in many
lens:
84.4
TP53
ENSSSCG00000017950
ENSG00000141510
Cellular tumor antigen p53
Low tissue specificity
Detected in all
TP53BP2
ENSSSCG00000010894
ENSG00000143514
Tumor protein p53 binding protein 2
Low tissue specificity
Detected in all
TP53I11
ENSSSCG00000031819
ENSG00000175274
Tumor protein p53 inducible protein 11
Low tissue specificity
Detected in many
TP53INP2
ENSSSCG00000022099
ENSG00000078804
Tumor protein p53 inducible nuclear protein 2
Tissue enhanced
Detected in many
adrenal gland:
54.2
brain:
119.3
TPBGL
ENSSSCG00000033899
ENSG00000261594
Trophoblast glycoprotein like
Tissue enhanced
Detected in some
adipose tissue:
6.6
brain:
8.3
pineal gland:
9.7
retina:
7.7
testis:
7.1
TPD52L1
ENSSSCG00000004225
ENSG00000111907
Tumor protein D52 like 1
Tissue enhanced
Detected in many
brain:
50.0
choroid plexus:
38.9
salivary gland:
61.3
TPH2
ENSSSCG00000021122
ENSG00000139287
Tryptophan hydroxylase 2
Group enriched
Detected in some
brain:
49.5
lens:
19.0
TPM1
ENSSSCG00000004570
ENSG00000140416
Tropomyosin alpha-1 chain
Tissue enhanced
Detected in all
skeletal muscle:
406.8
smooth muscle:
225.2
TPM2
ENSSSCG00000005316
ENSG00000198467
Tropomyosin beta chain
Tissue enriched
Detected in many
skeletal muscle:
765.9
TPPP
ENSSSCG00000032698
ENSG00000171368
Tubulin polymerization-promoting protein
Tissue enhanced
Detected in many
brain:
57.4
skin:
41.7
TPPP3
ENSSSCG00000035983
ENSG00000159713
Tubulin polymerization promoting protein family member 3
Low tissue specificity
Detected in all
TPRN
ENSSSCG00000036027
ENSG00000176058
Taperin
Tissue enhanced
Detected in all
stomach:
34.0
TRAF3IP3
ENSSSCG00000032721
ENSG00000009790
TRAF3 interacting protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
58.4
TRAIP
ENSSSCG00000026977
ENSG00000183763
TRAF interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
14.5
TRAK2
ENSSSCG00000016104
ENSG00000115993
Trafficking kinesin protein 2
Tissue enhanced
Detected in all
brain:
85.0
TRAM2
ENSSSCG00000038401
ENSG00000065308
Translocation associated membrane protein 2
Low tissue specificity
Detected in many
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