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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TEK
ENSSSCG00000005122
ENSG00000120156
TEK receptor tyrosine kinase
Low tissue specificity
Detected in many
TENM1
ENSSSCG00000012644
ENSG00000009694
Teneurin transmembrane protein 1
Tissue enhanced
Detected in many
brain:
32.8
epididymis:
13.9
thyroid gland:
29.0
TENM4
ENSSSCG00000014894
ENSG00000149256
Teneurin transmembrane protein 4
Low tissue specificity
Detected in many
TEP1
ENSSSCG00000002142
ENSG00000129566
Telomerase associated protein 1
Low tissue specificity
Detected in many
TESC
ENSSSCG00000009859
ENSG00000088992
Tescalcin
Tissue enhanced
Detected in many
male glands:
41.5
salivary gland:
93.2
TESK2
ENSSSCG00000003917
ENSG00000070759
Testis-specific kinase 2
Tissue enriched
Detected in all
lens:
130.5
TEX26
ENSSSCG00000009332
ENSG00000175664
Testis expressed 26
Tissue enhanced
Detected in many
fallopian tube:
24.6
mesothelial tissue:
20.7
testis:
45.8
TEX47
ENSSSCG00000021276
ENSG00000164645
Testis expressed 47
Tissue enriched
Detected in some
testis:
89.9
TEX9
ENSSSCG00000004602
ENSG00000151575
Testis-expressed sequence 9 protein
Tissue enhanced
Detected in all
skeletal muscle:
82.2
TFAP2A
ENSSSCG00000001036
ENSG00000137203
Transcription factor AP-2 alpha
Tissue enhanced
Detected in many
epididymis:
64.5
male glands:
52.5
skin:
56.0
TFAP2B
ENSSSCG00000025535
ENSG00000008196
Transcription factor AP-2-beta
Group enriched
Detected in many
breast:
49.4
epididymis:
82.5
TFAP2D
ENSSSCG00000001744
ENSG00000008197
Transcription factor AP-2 delta
Tissue enriched
Detected in some
brain:
22.4
TFEB
ENSSSCG00000001621
ENSG00000112561
Transcription factor EB
Low tissue specificity
Detected in all
TFEC
ENSSSCG00000038138
ENSG00000105967
Transcription factor EC
Tissue enhanced
Detected in many
kidney:
29.7
lymphoid tissue:
40.3
TFPI2
ENSSSCG00000015322
ENSG00000105825
Tissue factor pathway inhibitor 2
Tissue enhanced
Detected in many
adipose tissue:
67.0
ovary:
75.3
TGFB1I1
ENSSSCG00000035952
ENSG00000140682
Transforming growth factor beta 1 induced transcript 1
Tissue enhanced
Detected in many
cervix:
62.0
smooth muscle:
86.2
TGFB3
ENSSSCG00000002385
ENSG00000119699
Transforming growth factor beta-3 precursor
Tissue enhanced
Detected in many
cartilage:
37.8
penis:
51.2
TGFBI
ENSSSCG00000014316
ENSG00000120708
Transforming growth factor beta induced
Tissue enhanced
Detected in many
cartilage:
147.5
cornea:
213.4
TGFBR2
ENSSSCG00000011226
ENSG00000163513
Transforming growth factor beta receptor 2
Tissue enhanced
Detected in many
cartilage:
107.0
TGFBR3
ENSSSCG00000006911
ENSG00000069702
Transforming growth factor beta receptor type 3 precursor
Low tissue specificity
Detected in all
TGFBR3L
ENSSSCG00000040598
ENSG00000260001
Transforming growth factor beta receptor 3 like
Tissue enriched
Detected in many
pituitary gland:
64.9
TGIF1
ENSSSCG00000024174
ENSG00000177426
Homeobox protein TGIF1 isoform c
Low tissue specificity
Detected in many
TGIF2
ENSSSCG00000036002
ENSG00000118707
TGFB induced factor homeobox 2
Low tissue specificity
Detected in all
TH
ENSSSCG00000039767
ENSG00000180176
Tyrosine hydroxylase
Group enriched
Detected in some
adrenal gland:
80.4
brain:
136.9
THBD
ENSSSCG00000007115
ENSG00000178726
Thrombomodulin precursor
Tissue enhanced
Detected in many
mesothelial tissue:
74.0
THBS1
ENSSSCG00000004789
ENSG00000137801
Thrombospondin-1 precursor
Tissue enhanced
Detected in many
male glands:
224.8
ovary:
175.2
THBS2
ENSSSCG00000004012
ENSG00000186340
Thrombospondin 2
Tissue enhanced
Detected in many
cornea:
56.1
dura mater:
89.5
THBS4
ENSSSCG00000014117
ENSG00000113296
Thrombospondin 4
Tissue enhanced
Detected in many
bone marrow:
79.3
cornea:
86.9
smooth muscle:
78.7
synovial tissue:
82.6
THEM5
ENSSSCG00000006614
ENSG00000196407
Thioesterase superfamily member 5
Group enriched
Detected in some
cornea:
49.6
epididymis:
13.1
male glands:
27.5
mouth:
27.3
skin:
51.8
THEM6
ENSSSCG00000032063
ENSG00000130193
Thioesterase superfamily member 6
Tissue enriched
Detected in some
brain:
14.1
THRSP
ENSSSCG00000033822
ENSG00000151365
Thyroid hormone-inducible hepatic protein
Tissue enhanced
Detected in all
adipose tissue:
93.0
aorta:
76.3
bone marrow:
60.3
THSD4
ENSSSCG00000004980
ENSG00000187720
Thrombospondin type 1 domain containing 4
Tissue enhanced
Detected in all
dura mater:
57.7
THSD7A
ENSSSCG00000015350
ENSG00000005108
Thrombospondin type 1 domain containing 7A
Tissue enhanced
Detected in many
brain:
39.6
THY1
ENSSSCG00000032330
ENSG00000154096
Thy-1 membrane glycoprotein precursor
Tissue enhanced
Detected in many
brain:
89.5
TIAM1
ENSSSCG00000012034
ENSG00000156299
T cell lymphoma invasion and metastasis 1
Tissue enhanced
Detected in many
brain:
111.2
skin:
29.9
TIAM2
ENSSSCG00000004065
ENSG00000146426
T cell lymphoma invasion and metastasis 2
Tissue enhanced
Detected in many
brain:
33.8
cartilage:
71.5
TICAM2
ENSSSCG00000038141
ENSG00000243414
TIR domain-containing adapter molecule 2
Low tissue specificity
Detected in all
TIMP1
ENSSSCG00000012277
ENSG00000102265
Metalloproteinase inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
718.4
TIMP3
ENSSSCG00000031866
ENSG00000100234
TIMP metallopeptidase inhibitor 3
Low tissue specificity
Detected in all
TIMP4
ENSSSCG00000033000
ENSG00000157150
TIMP metallopeptidase inhibitor 4
Group enriched
Detected in many
adipose tissue:
32.1
brain:
42.7
TINAGL1
ENSSSCG00000003600
ENSG00000142910
Tubulointerstitial nephritis antigen like 1
Low tissue specificity
Detected in many
TJAP1
ENSSSCG00000001688
ENSG00000137221
Tight junction associated protein 1
Low tissue specificity
Detected in all
TLCD2
ENSSSCG00000040205
ENSG00000185561
TLC domain containing 2
Tissue enhanced
Detected in all
brain:
20.7
kidney:
19.1
TLDC2
ENSSSCG00000031690
ENSG00000101342
TBC/LysM-associated domain containing 2
Tissue enhanced
Detected in many
large intestine:
19.1
small intestine:
28.5
TLE2
ENSSSCG00000028995
ENSG00000065717
Transducin like enhancer of split 2
Tissue enhanced
Detected in many
male glands:
43.4
TLE4
ENSSSCG00000005288
ENSG00000106829
Transducin like enhancer of split 4
Low tissue specificity
Detected in all
TLL1
ENSSSCG00000008853
ENSG00000038295
Tolloid like 1
Tissue enhanced
Detected in many
brain:
53.6
synovial tissue:
21.0
TLL2
ENSSSCG00000010507
ENSG00000095587
Tolloid like 2
Tissue enhanced
Detected in many
brain:
16.1
TLNRD1
ENSSSCG00000037209
ENSG00000140406
Mesoderm development candidate 1
Low tissue specificity
Detected in all
TLR1
ENSSSCG00000026583
ENSG00000174125
Toll-like receptor 1 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
26.3
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