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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SYN2
ENSSSCG00000023225
ENSG00000157152
Synapsin II
Tissue enriched
Detected in many
brain:
57.8
SYNDIG1
ENSSSCG00000007130
ENSG00000101463
Synapse differentiation inducing 1
Tissue enriched
Detected in some
brain:
24.5
SYNDIG1L
ENSSSCG00000025000
ENSG00000183379
Synapse differentiation inducing 1 like
Group enriched
Detected in some
brain:
30.3
epididymis:
91.3
SYNE2
ENSSSCG00000005110
ENSG00000054654
Spectrin repeat containing nuclear envelope protein 2
Low tissue specificity
Detected in many
SYNE3
ENSSSCG00000002495
ENSG00000176438
Spectrin repeat containing nuclear envelope family member 3
Low tissue specificity
Detected in all
SYNGR2
ENSSSCG00000031600
ENSG00000108639
Synaptogyrin 2
Tissue enhanced
Detected in many
male glands:
78.2
SYNGR3
ENSSSCG00000008036
ENSG00000127561
Synaptogyrin 3
Tissue enriched
Detected in some
brain:
27.9
SYNJ2
ENSSSCG00000012315
ENSG00000078269
Synaptojanin 2
Tissue enhanced
Detected in many
brain:
35.4
male glands:
35.5
SYNPO2
ENSSSCG00000009111
ENSG00000172403
Synaptopodin 2
Tissue enhanced
Detected in many
smooth muscle:
198.1
SYNPO2L
ENSSSCG00000010303
ENSG00000166317
Synaptopodin 2 like
Group enriched
Detected in some
brain:
30.3
heart:
79.2
skeletal muscle:
64.8
SYNPR
ENSSSCG00000027617
ENSG00000163630
Synaptoporin
Tissue enriched
Detected in some
brain:
65.3
SYP
ENSSSCG00000012292
ENSG00000102003
Synaptophysin
Group enriched
Detected in some
brain:
52.9
pineal gland:
78.2
retina:
41.9
SYT1
ENSSSCG00000000948
ENSG00000067715
Synaptotagmin 1
Group enriched
Detected in some
brain:
76.2
retina:
43.4
SYT10
ENSSSCG00000000527
ENSG00000110975
Synaptotagmin 10
Group enriched
Detected in some
brain:
32.1
pituitary gland:
12.1
SYT12
ENSSSCG00000024837
ENSG00000173227
Synaptotagmin 12
Tissue enriched
Detected in many
brain:
22.5
SYT13
ENSSSCG00000031590
ENSG00000019505
Synaptotagmin 13
Tissue enhanced
Detected in some
brain:
32.7
pituitary gland:
9.8
retina:
11.5
SYT14
ENSSSCG00000015610
ENSG00000143469
Synaptotagmin 14
Tissue enhanced
Detected in some
brain:
15.0
pineal gland:
13.4
pituitary gland:
14.0
retina:
21.4
SYT16
ENSSSCG00000005098
ENSG00000139973
Synaptotagmin 16
Tissue enhanced
Detected in some
brain:
22.1
stomach:
10.8
testis:
7.4
SYT2
ENSSSCG00000010926
ENSG00000143858
Synaptotagmin 2
Tissue enriched
Detected in some
brain:
29.0
SYT3
ENSSSCG00000003222
ENSG00000213023
Synaptotagmin 3
Tissue enhanced
Detected in many
brain:
16.3
skin:
14.5
SYT4
ENSSSCG00000037079
ENSG00000132872
Synaptotagmin 4
Group enriched
Detected in some
brain:
56.4
pineal gland:
32.2
pituitary gland:
54.3
retina:
14.7
SYT5
ENSSSCG00000021843
ENSG00000129990
Synaptotagmin 5
Tissue enhanced
Detected in many
brain:
38.7
choroid plexus:
16.8
pineal gland:
17.3
pituitary gland:
29.8
SYT6
ENSSSCG00000006758
ENSG00000134207
Synaptotagmin 6
Tissue enriched
Detected in some
brain:
25.2
SYT7
ENSSSCG00000021906
ENSG00000011347
Synaptotagmin 7
Tissue enhanced
Detected in many
brain:
38.8
SYT9
ENSSSCG00000014599
ENSG00000170743
Synaptotagmin 9
Low tissue specificity
Detected in all
SYTL5
ENSSSCG00000012233
ENSG00000147041
Synaptotagmin like 5
Tissue enhanced
Detected in many
male glands:
39.9
stomach:
20.9
TAC1
ENSSSCG00000023592
ENSG00000006128
Tachykinin precursor 1
Tissue enriched
Detected in some
brain:
100.8
TAC3
ENSSSCG00000000418
ENSG00000166863
Neurokinin-B
Tissue enhanced
Detected in many
brain:
26.5
lymphoid tissue:
25.6
small intestine:
18.8
testis:
26.4
TACC3
ENSSSCG00000008677
ENSG00000013810
Transforming acidic coiled-coil containing protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
28.4
stomach:
29.7
testis:
35.4
TACR1
ENSSSCG00000036008
ENSG00000115353
Tachykinin receptor 1
Tissue enhanced
Detected in many
endometrium:
14.2
upper respiratory system:
19.0
TACR3
ENSSSCG00000009160
ENSG00000169836
Tachykinin receptor 3
Tissue enhanced
Detected in many
fallopian tube:
25.0
ovary:
10.9
pituitary gland:
11.8
TAGLN
ENSSSCG00000015073
ENSG00000149591
Transgelin
Tissue enhanced
Detected in many
smooth muscle:
633.1
TAGLN3
ENSSSCG00000037190
ENSG00000144834
Transgelin 3
Tissue enhanced
Detected in some
brain:
25.8
pineal gland:
38.2
retina:
11.5
TAL1
ENSSSCG00000035847
ENSG00000162367
TAL bHLH transcription factor 1, erythroid differentiation factor
Tissue enhanced
Detected in many
mesothelial tissue:
33.6
TANC1
ENSSSCG00000015880
ENSG00000115183
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Low tissue specificity
Detected in all
TANC2
ENSSSCG00000017298
ENSG00000170921
Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Low tissue specificity
Detected in many
TAS1R3
ENSSSCG00000003341
ENSG00000169962
Taste receptor type 1 member 3 precursor
Tissue enhanced
Detected in many
salivary gland:
23.8
TBC1D32
ENSSSCG00000004242
ENSG00000146350
TBC1 domain family member 32
Tissue enhanced
Detected in all
brain:
30.9
TBC1D8
ENSSSCG00000008169
ENSG00000204634
TBC1 domain family member 8
Low tissue specificity
Detected in many
TBC1D9
ENSSSCG00000032741
ENSG00000109436
TBC1 domain family member 9
Low tissue specificity
Detected in all
TBX15
ENSSSCG00000006725
ENSG00000092607
T-box 15
Tissue enhanced
Detected in many
cartilage:
46.3
mouth:
36.9
skeletal muscle:
74.2
synovial tissue:
31.8
TBX18
ENSSSCG00000004290
ENSG00000112837
T-box 18
Tissue enriched
Detected in many
cartilage:
52.6
TCEAL7
ENSSSCG00000031556
ENSG00000182916
Transcription elongation factor A like 7
Group enriched
Detected in some
brain:
23.4
pituitary gland:
7.1
TCF7L2
ENSSSCG00000010638
ENSG00000148737
Transcription factor 7 like 2
Low tissue specificity
Detected in all
TCIM
ENSSSCG00000032320
ENSG00000176907
Transcriptional and immune response regulator
Tissue enhanced
Detected in many
adipose tissue:
62.0
bone marrow:
73.2
TCTE1
ENSSSCG00000001705
ENSG00000146221
T-complex-associated-testis-expressed 1
Tissue enhanced
Detected in some
fallopian tube:
34.8
testis:
69.1
upper respiratory system:
30.1
TCTN1
ENSSSCG00000009826
ENSG00000204852
Tectonic family member 1
Tissue enhanced
Detected in all
choroid plexus:
36.2
TEAD4
ENSSSCG00000000736
ENSG00000197905
Transcriptional enhancer factor TEF-3
Tissue enhanced
Detected in many
mesothelial tissue:
35.0
skeletal muscle:
49.7
TECR
ENSSSCG00000031299
ENSG00000099797
Trans-2,3-enoyl-CoA reductase
Low tissue specificity
Detected in all
TEF
ENSSSCG00000035152
ENSG00000167074
TEF, PAR bZIP transcription factor
Low tissue specificity
Detected in all
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