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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
STAC
ENSSSCG00000023085
ENSG00000144681
SH3 and cysteine rich domain
Tissue enhanced
Detected in many
ductus deferens:
34.2
STAC2
ENSSSCG00000017508
ENSG00000141750
SH3 and cysteine rich domain 2
Tissue enhanced
Detected in many
breast:
99.5
male glands:
26.4
STAMBPL1
ENSSSCG00000010446
ENSG00000138134
AMSH-like protease
Tissue enriched
Detected in many
lens:
83.6
STARD8
ENSSSCG00000012828
ENSG00000130052
StAR related lipid transfer domain containing 8
Tissue enhanced
Detected in many
kidney:
39.0
lymphoid tissue:
32.9
STARD9
ENSSSCG00000022039
ENSG00000159433
StAR related lipid transfer domain containing 9
Tissue enhanced
Detected in all
vagus nerve:
46.1
STAT6
ENSSSCG00000040435
ENSG00000166888
Signal transducer and activator of transcription 6 isoform 2
Low tissue specificity
Detected in many
STC1
ENSSSCG00000009642
ENSG00000159167
Stanniocalcin-1 precursor
Tissue enhanced
Detected in all
mesothelial tissue:
60.3
STEAP3
ENSSSCG00000029304
ENSG00000115107
STEAP3 metalloreductase
Tissue enhanced
Detected in many
liver:
45.4
STK26
ENSSSCG00000021205
ENSG00000134602
Serine/threonine-protein kinase 26
Tissue enhanced
Detected in all
cartilage:
31.0
lymphoid tissue:
31.8
STK3
ENSSSCG00000006074
ENSG00000104375
Serine/threonine kinase 3
Low tissue specificity
Detected in all
STK32A
ENSSSCG00000014418
ENSG00000169302
Serine/threonine kinase 32A
Tissue enhanced
Detected in many
brain:
23.3
pituitary gland:
21.7
STK33
ENSSSCG00000030206
ENSG00000130413
Serine/threonine kinase 33
Tissue enhanced
Detected in many
fallopian tube:
24.9
testis:
60.3
STMN1
ENSSSCG00000026257
ENSG00000117632
Stathmin
Tissue enhanced
Detected in all
brain:
111.8
lymphoid tissue:
71.7
STMN2
ENSSSCG00000006160
ENSG00000104435
Stathmin 2
Group enriched
Detected in many
brain:
88.4
pineal gland:
62.2
STMN3
ENSSSCG00000038405
ENSG00000197457
Stathmin 3
Tissue enhanced
Detected in all
brain:
30.7
STMN4
ENSSSCG00000009662
ENSG00000015592
Stathmin 4
Tissue enriched
Detected in some
brain:
106.0
STOM
ENSSSCG00000036639
ENSG00000148175
Stomatin
Low tissue specificity
Detected in all
STOML3
ENSSSCG00000009366
ENSG00000133115
Stomatin like 3
Tissue enhanced
Detected in all
fallopian tube:
39.0
STON2
ENSSSCG00000002412
ENSG00000140022
Stonin 2
Low tissue specificity
Detected in all
STOX1
ENSSSCG00000010245
ENSG00000165730
Storkhead box 1
Tissue enhanced
Detected in many
heart:
23.7
pituitary gland:
24.1
STPG1
ENSSSCG00000003541
ENSG00000001460
Sperm tail PG-rich repeat containing 1
Tissue enriched
Detected in many
testis:
73.2
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
STRIP2
ENSSSCG00000016567
ENSG00000128578
Striatin interacting protein 2
Tissue enhanced
Detected in many
brain:
52.9
pineal gland:
26.5
STRN
ENSSSCG00000008499
ENSG00000115808
Striatin
Tissue enhanced
Detected in all
brain:
69.8
STUM
ENSSSCG00000024288
ENSG00000203685
Stum, mechanosensory transduction mediator homolog
Tissue enhanced
Detected in many
brain:
49.5
smooth muscle:
22.5
STX1B
ENSSSCG00000021238
ENSG00000099365
Syntaxin 1B
Group enriched
Detected in some
brain:
54.9
pineal gland:
26.2
STX3
ENSSSCG00000013119
ENSG00000166900
Syntaxin 3
Tissue enhanced
Detected in many
retina:
73.9
STXBP1
ENSSSCG00000005617
ENSG00000136854
Syntaxin binding protein 1
Group enriched
Detected in many
brain:
70.7
retina:
66.1
STXBP5
ENSSSCG00000004113
ENSG00000164506
Syntaxin binding protein 5
Low tissue specificity
Detected in all
STXBP5L
ENSSSCG00000039888
ENSG00000145087
Syntaxin binding protein 5 like
Tissue enhanced
Detected in all
brain:
55.6
pineal gland:
38.0
STXBP6
ENSSSCG00000001977
ENSG00000168952
Syntaxin-binding protein 6
Tissue enhanced
Detected in all
male glands:
64.5
SUCLG2
ENSSSCG00000011501
ENSG00000172340
Succinate-CoA ligase GDP-forming beta subunit
Low tissue specificity
Detected in all
SULF2
ENSSSCG00000007456
ENSG00000196562
Sulfatase 2
Tissue enhanced
Detected in all
cartilage:
77.4
cornea:
58.6
SULT1A3
ENSSSCG00000021557
ENSG00000196502,ENSG00000197165,ENSG00000213648,ENSG00000261052
Sulfotransferase 1A3
Tissue enhanced
Detected in many
adipose tissue:
70.7
cervix:
81.1
SULT4A1
ENSSSCG00000000026
ENSG00000130540
Sulfotransferase family 4A member 1
Tissue enriched
Detected in some
brain:
30.0
SUSD1
ENSSSCG00000005465
ENSG00000106868
Sushi domain containing 1
Tissue enhanced
Detected in many
lymphoid tissue:
36.3
SUSD2
ENSSSCG00000025393
ENSG00000099994
Sushi domain containing 2
Tissue enhanced
Detected in many
kidney:
42.5
SUSD3
ENSSSCG00000022237
ENSG00000157303
Sushi domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
39.3
SUSD4
ENSSSCG00000011176
ENSG00000143502
Sushi domain containing 4
Tissue enhanced
Detected in many
brain:
19.2
pineal gland:
13.8
SV2A
ENSSSCG00000006666
ENSG00000159164
Synaptic vesicle glycoprotein 2A
Group enriched
Detected in many
brain:
45.9
pineal gland:
30.2
retina:
24.4
SV2B
ENSSSCG00000002262
ENSG00000185518
Synaptic vesicle glycoprotein 2B
Group enriched
Detected in some
brain:
39.0
pineal gland:
59.9
retina:
27.8
SV2C
ENSSSCG00000034062
ENSG00000122012
Synaptic vesicle glycoprotein 2C
Tissue enhanced
Detected in some
brain:
25.1
pineal gland:
21.5
salivary gland:
33.9
SVEP1
ENSSSCG00000005455
ENSG00000165124
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
Low tissue specificity
Detected in many
SVIL
ENSSSCG00000011022
ENSG00000197321
Supervillin
Tissue enhanced
Detected in all
skeletal muscle:
83.5
smooth muscle:
95.6
SVOP
ENSSSCG00000009941
ENSG00000166111
SV2 related protein
Tissue enhanced
Detected in some
brain:
28.4
pineal gland:
10.9
pituitary gland:
6.3
retina:
7.2
testis:
5.6
SWAP70
ENSSSCG00000013410
ENSG00000133789
Switching B cell complex subunit SWAP70
Low tissue specificity
Detected in many
SYBU
ENSSSCG00000006023
ENSG00000147642
Syntabulin
Tissue enhanced
Detected in many
brain:
49.8
SYCP2
ENSSSCG00000007529
ENSG00000196074
Synaptonemal complex protein 2
Group enriched
Detected in many
epididymis:
13.9
testis:
55.2
SYK
ENSSSCG00000009589
ENSG00000165025
Tyrosine-protein kinase SYK
Tissue enhanced
Detected in many
lymphoid tissue:
45.1
upper respiratory system:
24.1
SYN1
ENSSSCG00000012276
ENSG00000008056
Synapsin-1
Tissue enriched
Detected in many
brain:
71.7
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