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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SPAG6
ENSSSCG00000011080
ENSG00000077327
Sperm-associated antigen 6
Group enriched
Detected in some
choroid plexus:
19.6
fallopian tube:
23.3
testis:
73.4
upper respiratory system:
18.7
SPARC
ENSSSCG00000017082
ENSG00000113140
SPARC precursor
Tissue enhanced
Detected in all
cartilage:
551.7
SPARCL1
ENSSSCG00000009222
ENSG00000152583
SPARC-like protein 1 precursor
Tissue enhanced
Detected in all
cervix:
136.6
smooth muscle:
134.5
SPATA17
ENSSSCG00000029778
ENSG00000162814
Spermatogenesis-associated protein 17
Tissue enhanced
Detected in many
epididymis:
24.3
fallopian tube:
33.2
testis:
30.9
SPATA18
ENSSSCG00000008834
ENSG00000163071
Mitochondria-eating protein
Group enriched
Detected in some
fallopian tube:
62.9
lung:
16.5
testis:
63.6
upper respiratory system:
30.6
SPATA3
ENSSSCG00000016269
ENSG00000173699
Spermatogenesis-associated protein 3
Tissue enriched
Detected in some
testis:
231.7
SPATC1
ENSSSCG00000005923
ENSG00000186583
Spermatogenesis and centriole associated 1
Tissue enriched
Detected in some
testis:
107.9
SPATS1
ENSSSCG00000039903
ENSG00000249481
Spermatogenesis associated serine rich 1
Tissue enhanced
Detected in some
choroid plexus:
18.6
fallopian tube:
17.4
upper respiratory system:
18.2
SPATS2L
ENSSSCG00000016090
ENSG00000196141
SPATS2-like protein
Tissue enhanced
Detected in all
thyroid gland:
99.1
SPEF1
ENSSSCG00000007149
ENSG00000101222
Sperm flagellar protein 1
Tissue enhanced
Detected in many
fallopian tube:
29.9
upper respiratory system:
26.3
SPEF2
ENSSSCG00000016831
ENSG00000152582
Sperm flagellar protein 2
Tissue enhanced
Detected in many
choroid plexus:
35.6
fallopian tube:
41.3
testis:
33.7
SPHK1
ENSSSCG00000017178
ENSG00000176170
Sphingosine kinase 1
Tissue enhanced
Detected in many
epididymis:
41.9
lens:
21.1
SPHKAP
ENSSSCG00000016256
ENSG00000153820
SPHK1 interactor, AKAP domain containing
Group enriched
Detected in many
brain:
54.8
fallopian tube:
17.6
small intestine:
20.9
SPI1
ENSSSCG00000013237
ENSG00000066336
Transcription factor PU.1
Tissue enhanced
Detected in many
lung:
52.3
SPIDR
ENSSSCG00000006277
ENSG00000164808
Scaffolding protein involved in DNA repair
Low tissue specificity
Detected in all
SPOCK1
ENSSSCG00000032423
ENSG00000152377
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1
Group enriched
Detected in many
brain:
71.0
pineal gland:
53.0
SPOCK2
ENSSSCG00000010283
ENSG00000107742
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2
Tissue enhanced
Detected in many
brain:
67.5
SPOCK3
ENSSSCG00000009722
ENSG00000196104
SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3
Group enriched
Detected in some
brain:
32.3
pituitary gland:
47.7
retina:
17.7
thyroid gland:
37.7
SPON1
ENSSSCG00000013393
ENSG00000262655
Spondin 1
Tissue enhanced
Detected in all
ovary:
52.6
SPON2
ENSSSCG00000039488
ENSG00000159674
Spondin 2
Tissue enhanced
Detected in many
cartilage:
86.5
SPRED2
ENSSSCG00000008357
ENSG00000198369
Sprouty related EVH1 domain containing 2
Low tissue specificity
Detected in all
SPRY3
ENSSSCG00000034345
ENSG00000168939
Sprouty RTK signaling antagonist 3
Tissue enhanced
Detected in some
brain:
19.8
skeletal muscle:
6.6
SPRY4
ENSSSCG00000036322
ENSG00000187678
Sprouty RTK signaling antagonist 4
Low tissue specificity
Detected in many
SPSB1
ENSSSCG00000035940
ENSG00000171621
SplA/ryanodine receptor domain and SOCS box containing 1
Tissue enhanced
Detected in many
cartilage:
51.5
SPTAN1
ENSSSCG00000005654
ENSG00000197694
Spectrin alpha, non-erythrocytic 1
Low tissue specificity
Detected in all
SPTB
ENSSSCG00000002277
ENSG00000070182
Spectrin beta, erythrocytic
Tissue enhanced
Detected in many
heart:
28.4
pineal gland:
64.4
skeletal muscle:
43.1
SPTBN4
ENSSSCG00000037494
ENSG00000160460
Spectrin beta, non-erythrocytic 4
Tissue enhanced
Detected in some
brain:
20.7
SPTBN5
ENSSSCG00000004736
ENSG00000137877
Spectrin beta, non-erythrocytic 5
Group enriched
Detected in many
retina:
30.8
vagus nerve:
25.1
SPTLC3
ENSSSCG00000007072
ENSG00000172296
Serine palmitoyltransferase long chain base subunit 3
Tissue enhanced
Detected in many
skin:
21.9
vagus nerve:
24.0
SPTSSB
ENSSSCG00000029080
ENSG00000196542
Serine palmitoyltransferase small subunit B
Tissue enhanced
Detected in some
brain:
8.4
large intestine:
13.5
skin:
8.4
stomach:
21.7
urinary bladder:
8.1
SQLE
ENSSSCG00000005970
ENSG00000104549
Squalene monooxygenase
Low tissue specificity
Detected in all
SRGN
ENSSSCG00000023374
ENSG00000122862
Serglycin
Tissue enhanced
Detected in many
bone marrow:
75.2
dura mater:
42.3
SRL
ENSSSCG00000007949
ENSG00000185739
Sarcalumenin
Group enriched
Detected in many
heart:
81.0
skeletal muscle:
100.4
SRRM3
ENSSSCG00000032250
ENSG00000177679
Serine/arginine repetitive matrix 3
Tissue enhanced
Detected in many
adrenal gland:
53.3
brain:
19.6
cervix:
18.5
retina:
25.2
SRRM4
ENSSSCG00000009845
ENSG00000139767
Serine/arginine repetitive matrix 4
Tissue enhanced
Detected in some
brain:
20.3
pineal gland:
14.1
retina:
25.1
SRXN1
ENSSSCG00000023298
ENSG00000271303
Sulfiredoxin 1
Tissue enhanced
Detected in many
ovary:
41.0
SSPO
ENSSSCG00000039661
ENSG00000197558
SCO-spondin
Tissue enriched
Detected in some
brain:
35.0
SST
ENSSSCG00000033815
ENSG00000157005
Somatostatin Somatostatin-28 Somatostatin-14
Tissue enhanced
Detected in many
brain:
31.9
small intestine:
13.8
stomach:
17.6
SSTR3
ENSSSCG00000027106
ENSG00000278195
Somatostatin receptor type 3
Tissue enhanced
Detected in many
brain:
12.8
choroid plexus:
49.4
SSTR5
ENSSSCG00000033234
ENSG00000162009
Somatostatin receptor type 5
Tissue enhanced
Detected in some
brain:
9.6
pituitary gland:
5.7
retina:
5.9
small intestine:
4.5
SSX2IP
ENSSSCG00000003757
ENSG00000117155
SSX family member 2 interacting protein
Tissue enhanced
Detected in all
lens:
80.1
ST18
ENSSSCG00000006266
ENSG00000147488
ST18, C2H2C-type zinc finger
Tissue enriched
Detected in some
brain:
41.0
ST3GAL4
ENSSSCG00000015232
ENSG00000110080
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 4
Tissue enriched
Detected in many
male glands:
175.5
ST6GALNAC3
ENSSSCG00000024494
ENSG00000184005
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
Group enriched
Detected in many
brain:
25.7
cornea:
24.7
ST7
ENSSSCG00000016629
ENSG00000004866
Suppressor of tumorigenicity 7 protein
Low tissue specificity
Detected in all
ST8SIA3
ENSSSCG00000038971
ENSG00000177511
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
Tissue enhanced
Detected in some
brain:
45.8
pituitary gland:
18.1
retina:
8.7
ST8SIA4
ENSSSCG00000035539
ENSG00000113532
CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase precursor
Tissue enhanced
Detected in many
lymphoid tissue:
30.4
ST8SIA5
ENSSSCG00000032053
ENSG00000101638
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
Tissue enhanced
Detected in all
adrenal gland:
26.0
brain:
43.6
choroid plexus:
29.2
ST8SIA6
ENSSSCG00000011034
ENSG00000148488
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
Tissue enhanced
Detected in some
epididymis:
36.9
fallopian tube:
13.4
pituitary gland:
11.4
STAB1
ENSSSCG00000011443
ENSG00000010327
Stabilin 1
Tissue enhanced
Detected in many
synovial tissue:
60.8
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