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Human disease related genes
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Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C1QC
ENSSSCG00000038706
ENSG00000159189
Complement C1q subcomponent subunit C precursor
Tissue enhanced
Detected in many
lymphoid tissue:
98.3
synovial tissue:
86.3
C1QL1
ENSSSCG00000039101
ENSG00000131094
C1q-related factor precursor
Group enriched
Detected in some
brain:
32.7
pineal gland:
19.1
retina:
13.8
C1QL2
ENSSSCG00000015717
ENSG00000144119
Complement C1q like 2
Group enriched
Detected in some
brain:
12.9
pituitary gland:
3.2
retina:
10.1
C1QL4
ENSSSCG00000000197
ENSG00000186897
Complement C1q like 4
Tissue enhanced
Detected in some
brain:
11.8
cervix:
22.0
endometrium:
9.0
fallopian tube:
10.5
C1QTNF1
ENSSSCG00000035511
ENSG00000173918
C1q and TNF related 1
Low tissue specificity
Detected in many
C1QTNF12
ENSSSCG00000003333
ENSG00000184163
C1q and TNF related 12
Tissue enhanced
Detected in many
skin:
22.9
C1QTNF4
ENSSSCG00000013231
ENSG00000172247
C1q and TNF related 4
Group enriched
Detected in many
brain:
45.2
retina:
11.9
C1QTNF7
ENSSSCG00000008737
ENSG00000163145
Complement C1q tumor necrosis factor-related protein 7 precursor
Tissue enhanced
Detected in many
cornea:
30.9
C1R
ENSSSCG00000000675
ENSG00000159403
Complement C1r
Tissue enhanced
Detected in many
liver:
178.7
C1S
ENSSSCG00000039847
ENSG00000182326
Complement C1s subcomponent precursor
Tissue enhanced
Detected in all
liver:
141.3
C2
ENSSSCG00000001422
ENSG00000166278
Complement C2 precursor
Tissue enhanced
Detected in many
liver:
61.2
pineal gland:
31.1
synovial tissue:
38.1
C20orf202
ENSSSCG00000007192
ENSG00000215595
Chromosome 20 open reading frame 202
Tissue enhanced
Detected in some
brain:
17.9
lens:
6.0
C20orf85
ENSSSCG00000007510
ENSG00000124237
Uncharacterized protein C20orf85 homolog
Tissue enhanced
Detected in some
fallopian tube:
103.3
lung:
54.0
upper respiratory system:
95.4
C21orf62
ENSSSCG00000012038
ENSG00000205929
Uncharacterized protein C21orf62 homolog precursor
Tissue enriched
Detected in some
choroid plexus:
59.5
C21orf91
ENSSSCG00000033025
ENSG00000154642
Chromosome 21 open reading frame 91
Tissue enhanced
Detected in all
brain:
38.0
retina:
44.2
C22orf23
ENSSSCG00000000117
ENSG00000128346
Chromosome 22 open reading frame 23
Tissue enhanced
Detected in many
testis:
33.3
C2CD2L
ENSSSCG00000015111
ENSG00000172375
C2CD2 like
Low tissue specificity
Detected in all
C2CD4C
ENSSSCG00000037177
ENSG00000183186
C2 calcium dependent domain containing 4C
Tissue enriched
Detected in some
brain:
11.4
C2orf88
ENSSSCG00000033941
ENSG00000187699
Chromosome 2 open reading frame 88
Tissue enhanced
Detected in all
heart:
57.9
C3
ENSSSCG00000013551
ENSG00000125730
Complement C3 precursor
Tissue enhanced
Detected in many
liver:
357.3
small intestine:
96.6
stomach:
99.9
C3orf14
ENSSSCG00000011486
ENSG00000114405
Chromosome 3 open reading frame 14
Tissue enhanced
Detected in many
brain:
13.4
pineal gland:
18.9
pituitary gland:
10.1
retina:
9.6
C3orf58
ENSSSCG00000036206
ENSG00000181744
Chromosome 3 open reading frame 58
Low tissue specificity
Detected in all
C3orf70
ENSSSCG00000038724
ENSG00000187068
Chromosome 3 open reading frame 70
Tissue enhanced
Detected in many
cervix:
28.9
C3orf84
ENSSSCG00000011380
ENSG00000236980
Chromosome 3 open reading frame 84
Tissue enhanced
Detected in many
fallopian tube:
30.6
testis:
67.2
C4A
ENSSSCG00000001427
ENSG00000224389,ENSG00000244731
Complement C4-A precursor
Tissue enhanced
Detected in many
adipose tissue:
79.1
liver:
104.7
C4BPA
ENSSSCG00000015662
Apolipoprotein R precursor
Tissue enhanced
Detected in many
small intestine:
84.1
synovial tissue:
193.7
C5AR1
ENSSSCG00000029371
ENSG00000197405
C5a anaphylatoxin chemotactic receptor 1
Tissue enhanced
Detected in all
synovial tissue:
61.0
C6orf118
ENSSSCG00000004028
ENSG00000112539
Chromosome 6 open reading frame 118
Tissue enhanced
Detected in some
choroid plexus:
20.7
fallopian tube:
37.1
testis:
23.9
upper respiratory system:
17.7
C6orf163
ENSSSCG00000004301
ENSG00000203872
Chromosome 6 open reading frame 163
Tissue enhanced
Detected in many
pituitary gland:
18.2
testis:
39.6
C7
ENSSSCG00000016859
ENSG00000112936
Complement component C7 precursor
Tissue enhanced
Detected in many
gallbladder:
59.4
heart:
46.0
lymphoid tissue:
47.5
small intestine:
47.9
C8G
ENSSSCG00000005840
ENSG00000176919
Complement component C8 gamma chain precursor
Tissue enriched
Detected in some
liver:
111.8
C8orf34
ENSSSCG00000035887
ENSG00000165084
Chromosome 8 open reading frame 34
Tissue enhanced
Detected in all
epididymis:
54.5
C8orf46
ENSSSCG00000023848
ENSG00000169085
Chromosome 8 open reading frame 46
Group enriched
Detected in some
brain:
59.3
lens:
47.6
C9orf24
ENSSSCG00000010980
ENSG00000164972
Chromosome 9 open reading frame 24
Tissue enhanced
Detected in many
choroid plexus:
17.5
fallopian tube:
20.2
testis:
68.6
CA10
ENSSSCG00000023169
ENSG00000154975
Carbonic anhydrase 10
Tissue enhanced
Detected in some
brain:
38.6
pineal gland:
34.4
retina:
18.7
CA11
ENSSSCG00000003147
ENSG00000063180
Carbonic anhydrase-related protein 11 precursor
Tissue enhanced
Detected in many
brain:
50.6
cartilage:
33.0
CA12
ENSSSCG00000004565
ENSG00000074410
Carbonic anhydrase 12
Tissue enhanced
Detected in many
kidney:
102.2
large intestine:
56.6
male glands:
36.5
CA14
ENSSSCG00000027875
ENSG00000118298
Carbonic anhydrase 14
Tissue enhanced
Detected in all
brain:
35.7
skeletal muscle:
43.4
CA2
ENSSSCG00000006140
ENSG00000104267
Carbonic anhydrase 2
Tissue enhanced
Detected in many
choroid plexus:
70.9
stomach:
149.1
CA3
ENSSSCG00000006141
ENSG00000164879
Carbonic anhydrase 3
Tissue enriched
Detected in many
skeletal muscle:
324.2
CA4
ENSSSCG00000023186
ENSG00000167434
Carbonic anhydrase 4 precursor
Tissue enriched
Detected in many
gallbladder:
83.4
CA5B
ENSSSCG00000012141
ENSG00000169239
Carbonic anhydrase 5B
Tissue enhanced
Detected in all
adipose tissue:
42.3
CA8
ENSSSCG00000006233
ENSG00000178538
Carbonic anhydrase 8
Tissue enhanced
Detected in many
brain:
39.4
male glands:
79.3
CABP7
ENSSSCG00000025869
ENSG00000100314
Calcium binding protein 7
Tissue enriched
Detected in some
brain:
38.9
CACHD1
ENSSSCG00000004829
ENSG00000158966
Cache domain containing 1
Low tissue specificity
Detected in many
CACNA1A
ENSSSCG00000013754
ENSG00000141837
Calcium voltage-gated channel subunit alpha1 A
Tissue enhanced
Detected in many
brain:
52.1
pineal gland:
19.4
CACNA1C
ENSSSCG00000027725
ENSG00000151067
Calcium voltage-gated channel subunit alpha1 C
Tissue enhanced
Detected in many
heart:
35.8
smooth muscle:
38.1
CACNA1D
ENSSSCG00000011455
ENSG00000157388
Calcium voltage-gated channel subunit alpha1 D
Tissue enhanced
Detected in many
adrenal gland:
52.2
male glands:
30.6
CACNA1E
ENSSSCG00000015543
ENSG00000198216
Calcium voltage-gated channel subunit alpha1 E
Tissue enhanced
Detected in many
brain:
30.0
CACNA1G
ENSSSCG00000017562
ENSG00000006283
Calcium voltage-gated channel subunit alpha1 G
Tissue enhanced
Detected in many
brain:
25.6
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