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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CACNA1I
ENSSSCG00000000082
ENSG00000100346
Calcium voltage-gated channel subunit alpha1 I
Tissue enhanced
Detected in some
brain:
20.9
kidney:
16.8
CACNA2D2
ENSSSCG00000011412
ENSG00000007402
Calcium voltage-gated channel auxiliary subunit alpha2delta 2
Tissue enhanced
Detected in many
brain:
20.8
urinary bladder:
23.7
CACNA2D3
ENSSSCG00000027019
ENSG00000157445
Calcium voltage-gated channel auxiliary subunit alpha2delta 3
Tissue enhanced
Detected in many
brain:
24.1
heart:
16.5
CACNB1
ENSSSCG00000017510
ENSG00000067191
Calcium voltage-gated channel auxiliary subunit beta 1
Tissue enhanced
Detected in all
skeletal muscle:
66.7
CACNB2
ENSSSCG00000011040
ENSG00000165995
Calcium voltage-gated channel auxiliary subunit beta 2
Low tissue specificity
Detected in all
CACNB3
ENSSSCG00000032967
ENSG00000167535
Calcium voltage-gated channel auxiliary subunit beta 3
Tissue enriched
Detected in many
brain:
23.0
CACNB4
ENSSSCG00000029073
ENSG00000182389
Voltage-dependent L-type calcium channel subunit beta-4
Tissue enriched
Detected in many
brain:
64.8
CACNG2
ENSSSCG00000033551
ENSG00000166862
Calcium voltage-gated channel auxiliary subunit gamma 2
Tissue enhanced
Detected in some
brain:
15.4
retina:
5.4
CACNG4
ENSSSCG00000037202
ENSG00000075461
Calcium voltage-gated channel auxiliary subunit gamma 4
Tissue enriched
Detected in some
brain:
62.5
CACNG5
ENSSSCG00000036461
ENSG00000075429
Calcium voltage-gated channel auxiliary subunit gamma 5
Tissue enhanced
Detected in some
adipose tissue:
8.6
brain:
37.1
retina:
14.7
CACNG8
ENSSSCG00000003255
ENSG00000142408
Calcium voltage-gated channel auxiliary subunit gamma 8
Tissue enriched
Detected in some
brain:
48.4
CADM3
ENSSSCG00000006415
ENSG00000162706
Cell adhesion molecule 3
Tissue enhanced
Detected in many
brain:
64.4
lens:
28.0
pineal gland:
26.0
vagus nerve:
41.2
CADPS
ENSSSCG00000011489
ENSG00000163618
Calcium dependent secretion activator
Tissue enhanced
Detected in some
brain:
34.3
cornea:
14.2
pituitary gland:
14.2
retina:
54.8
CADPS2
ENSSSCG00000016611
ENSG00000081803
Calcium dependent secretion activator 2
Tissue enhanced
Detected in many
brain:
78.6
CALB1
ENSSSCG00000006125
ENSG00000104327
Calbindin
Group enriched
Detected in some
brain:
76.8
kidney:
42.2
retina:
19.6
CALB2
ENSSSCG00000002730
ENSG00000172137
Calbindin 2
Group enriched
Detected in some
brain:
95.3
retina:
43.5
CALCR
ENSSSCG00000015320
ENSG00000004948
Calcitonin receptor
Tissue enriched
Detected in some
brain:
81.1
CALCRL
ENSSSCG00000016031
ENSG00000064989
Calcitonin gene-related peptide type 1 receptor precursor
Tissue enhanced
Detected in many
lung:
51.7
CALM1
ENSSSCG00000025768
Calmodulin
Tissue enhanced
Detected in all
brain:
160.5
CALML4
ENSSSCG00000026517
ENSG00000129007
Calmodulin-like 4
Tissue enhanced
Detected in many
choroid plexus:
49.8
CALN1
ENSSSCG00000007730
ENSG00000183166
Calneuron 1
Tissue enriched
Detected in some
adrenal gland:
82.4
CALY
ENSSSCG00000034701
ENSG00000130643
Calcyon neuron specific vesicular protein
Group enriched
Detected in all
brain:
56.8
pituitary gland:
26.8
CAMK1D
ENSSSCG00000011111
ENSG00000183049
Calcium/calmodulin-dependent protein kinase type 1D
Tissue enhanced
Detected in many
epididymis:
48.3
CAMK1G
ENSSSCG00000015619
ENSG00000008118
Calcium/calmodulin-dependent protein kinase type 1G
Tissue enhanced
Detected in many
brain:
22.6
cervix:
37.6
endometrium:
22.5
CAMK2A
ENSSSCG00000014443
ENSG00000070808
Calcium/calmodulin dependent protein kinase II alpha
Tissue enriched
Detected in some
brain:
130.1
CAMK2B
ENSSSCG00000039535
ENSG00000058404
Calcium/calmodulin dependent protein kinase II beta
Tissue enhanced
Detected in some
brain:
59.2
heart:
18.2
skeletal muscle:
17.4
CAMK2D
ENSSSCG00000009123
ENSG00000145349
Calcium/calmodulin-dependent protein kinase type II subunit delta
Tissue enhanced
Detected in all
heart:
155.3
CAMK2G
ENSSSCG00000010311
ENSG00000148660
Calcium/calmodulin-dependent protein kinase type II subunit gamma
Low tissue specificity
Detected in all
CAMK4
ENSSSCG00000037019
ENSG00000152495
Calcium/calmodulin dependent protein kinase IV
Tissue enhanced
Detected in many
brain:
29.5
lymphoid tissue:
64.3
CAMKV
ENSSSCG00000025416
ENSG00000164076
CaM kinase like vesicle associated
Tissue enriched
Detected in some
brain:
59.1
CAMSAP3
ENSSSCG00000013583
ENSG00000076826
Calmodulin regulated spectrin associated protein family member 3
Tissue enhanced
Detected in many
stomach:
45.4
CAPN1
ENSSSCG00000012999
ENSG00000014216
Calpain-1 catalytic subunit
Low tissue specificity
Detected in all
CAPN6
ENSSSCG00000012584
ENSG00000077274
Calpain 6
Tissue enriched
Detected in many
cartilage:
177.0
CARD9
ENSSSCG00000031715
ENSG00000187796
Caspase recruitment domain family member 9
Tissue enhanced
Detected in many
lymphoid tissue:
36.5
CARHSP1
ENSSSCG00000026710
ENSG00000153048
Calcium regulated heat stable protein 1
Tissue enriched
Detected in all
lens:
154.8
CARMIL1
ENSSSCG00000001100
ENSG00000079691
Capping protein regulator and myosin 1 linker 1
Low tissue specificity
Detected in all
CARMIL2
ENSSSCG00000022722
ENSG00000159753
Capping protein regulator and myosin 1 linker 2
Tissue enhanced
Detected in many
lymphoid tissue:
40.8
CARTPT
ENSSSCG00000016972
ENSG00000164326
Cocaine- and amphetamine-regulated transcript protein precursor
Group enriched
Detected in some
brain:
68.0
retina:
21.4
CASKIN1
ENSSSCG00000033059
ENSG00000167971
CASK interacting protein 1
Tissue enhanced
Detected in many
brain:
21.1
cartilage:
28.5
CASQ1
ENSSSCG00000006390
ENSG00000143318
Calsequestrin-1 precursor
Tissue enriched
Detected in some
skeletal muscle:
270.8
CASQ2
ENSSSCG00000006745
ENSG00000118729
Calsequestrin 2
Tissue enriched
Detected in many
heart:
100.4
CAST
ENSSSCG00000014170
ENSG00000153113
Calpastatin
Low tissue specificity
Detected in all
CAV1
ENSSSCG00000016634
ENSG00000105974
Caveolin-1 isoform a
Tissue enhanced
Detected in many
penis:
98.1
CAV2
ENSSSCG00000016635
ENSG00000105971
Caveolin-2
Low tissue specificity
Detected in many
CAVIN1
ENSSSCG00000035446
ENSG00000177469
Caveolae associated protein 1
Low tissue specificity
Detected in many
CAVIN2
ENSSSCG00000026618
ENSG00000168497
Caveolae associated protein 2
Tissue enhanced
Detected in many
smooth muscle:
63.8
CBFA2T3
ENSSSCG00000002648
ENSG00000129993
CBFA2/RUNX1 translocation partner 3
Low tissue specificity
Detected in many
CBFB
ENSSSCG00000033811
ENSG00000067955
Core-binding factor beta subunit
Low tissue specificity
Detected in all
CBLB
ENSSSCG00000022486
ENSG00000114423
Cbl proto-oncogene B
Low tissue specificity
Detected in all
CBLN1
ENSSSCG00000040652
ENSG00000102924
Cerebellin-1 precursor
Tissue enriched
Detected in some
brain:
84.6
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