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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BIN2
ENSSSCG00000000223
ENSG00000110934
Bridging integrator 2
Tissue enhanced
Detected in many
lymphoid tissue:
76.0
testis:
27.2
BLNK
ENSSSCG00000010504
ENSG00000095585
B cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
38.4
small intestine:
27.2
BMP1
ENSSSCG00000009620
ENSG00000168487
Bone morphogenetic protein 1
Tissue enhanced
Detected in many
cartilage:
47.6
ovary:
59.8
BMP3
ENSSSCG00000029061
ENSG00000152785
Bone morphogenetic protein 3 precursor
Tissue enhanced
Detected in many
adipose tissue:
20.6
mesothelial tissue:
31.4
BMP4
ENSSSCG00000005045
ENSG00000125378
Bone morphogenetic protein 4 precursor
Low tissue specificity
Detected in many
BMP5
ENSSSCG00000001478
ENSG00000112175
Bone morphogenetic protein 5
Tissue enhanced
Detected in many
cartilage:
25.1
thyroid gland:
42.2
BMP6
ENSSSCG00000001027
ENSG00000153162
Bone morphogenetic protein 6 precursor
Tissue enriched
Detected in many
cartilage:
84.5
BMP7
ENSSSCG00000007501
ENSG00000101144
Bone morphogenetic protein 7 precursor
Tissue enhanced
Detected in many
choroid plexus:
47.2
BMPER
ENSSSCG00000016665
ENSG00000164619
BMP binding endothelial regulator
Tissue enhanced
Detected in many
cartilage:
59.5
BNC2
ENSSSCG00000005180
ENSG00000173068
Basonuclin 2
Tissue enhanced
Detected in many
cervix:
56.7
BOC
ENSSSCG00000025826
ENSG00000144857
BOC cell adhesion associated, oncogene regulated
Tissue enhanced
Detected in many
cartilage:
46.5
BRF2
ENSSSCG00000040833
ENSG00000104221
BRF2, RNA polymerase III transcription initiation factor subunit
Low tissue specificity
Detected in all
BRINP1
ENSSSCG00000005504
ENSG00000078725
BMP/retinoic acid-inducible neural-specific protein 1 precursor
Tissue enriched
Detected in many
brain:
39.1
BRINP2
ENSSSCG00000015515
ENSG00000198797
BMP/retinoic acid inducible neural specific 2
Group enriched
Detected in some
brain:
23.6
pineal gland:
6.3
BRINP3
ENSSSCG00000010809
ENSG00000162670
BMP/retinoic acid inducible neural specific 3
Tissue enhanced
Detected in some
brain:
26.7
ductus deferens:
10.9
BRSK1
ENSSSCG00000032656
ENSG00000160469
BR serine/threonine kinase 1
Tissue enhanced
Detected in many
brain:
34.5
BSPRY
ENSSSCG00000021173
ENSG00000119411
B-box and SPRY domain containing
Tissue enhanced
Detected in many
large intestine:
20.8
testis:
29.4
BST1
ENSSSCG00000028359
ENSG00000109743
Bone marrow stromal cell antigen 1
Low tissue specificity
Detected in many
BTBD11
ENSSSCG00000000162
ENSG00000151136
BTB domain containing 11
Tissue enhanced
Detected in many
skin:
28.9
BTBD17
ENSSSCG00000026789
ENSG00000204347
BTB domain containing 17
Tissue enriched
Detected in some
brain:
24.9
BTBD3
ENSSSCG00000020853
ENSG00000132640
BTB domain containing 3
Tissue enhanced
Detected in all
brain:
64.1
BTBD8
ENSSSCG00000035196
ENSG00000189195
BTB domain containing 8
Tissue enhanced
Detected in all
brain:
26.7
pineal gland:
66.6
BTG1
ENSSSCG00000035790
ENSG00000133639
Protein BTG1
Low tissue specificity
Detected in all
BTG2
ENSSSCG00000028322
ENSG00000159388
Protein BTG2
Low tissue specificity
Detected in many
BTK
ENSSSCG00000026742
ENSG00000010671
Tyrosine-protein kinase BTK
Tissue enhanced
Detected in many
lymphoid tissue:
33.5
upper respiratory system:
17.9
C10orf105
ENSSSCG00000038545
ENSG00000214688
Chromosome 10 open reading frame 105
Group enriched
Detected in some
brain:
17.0
cartilage:
9.4
synovial tissue:
16.6
C10orf90
ENSSSCG00000010747
ENSG00000154493
Chromosome 10 open reading frame 90
Tissue enhanced
Detected in some
brain:
39.2
skin:
14.2
testis:
35.6
C11orf53
ENSSSCG00000015018
ENSG00000150750
Chromosome 11 open reading frame 53
Tissue enhanced
Detected in many
stomach:
10.8
upper respiratory system:
18.7
C11orf70
ENSSSCG00000014980
ENSG00000137691
Chromosome 11 open reading frame 70
Tissue enhanced
Detected in many
choroid plexus:
29.2
kidney:
27.5
testis:
45.1
C11orf87
ENSSSCG00000036943
ENSG00000185742
Chromosome 11 open reading frame 87
Tissue enriched
Detected in some
brain:
39.4
C11orf88
ENSSSCG00000015021
ENSG00000183644
Chromosome 11 open reading frame 88
Tissue enhanced
Detected in some
choroid plexus:
19.9
fallopian tube:
35.8
lung:
16.1
testis:
25.1
upper respiratory system:
28.2
C11orf96
ENSSSCG00000039182
ENSG00000187479
Chromosome 11 open reading frame 96
Tissue enhanced
Detected in many
aorta:
137.7
gallbladder:
125.2
C12orf75
ENSSSCG00000031661
ENSG00000235162
Chromosome 12 open reading frame 75
Low tissue specificity
Detected in many
C14orf132
ENSSSCG00000033807
ENSG00000227051
Chromosome 14 open reading frame 132
Tissue enhanced
Detected in many
brain:
36.9
C14orf37
ENSSSCG00000005071
ENSG00000139971
Chromosome 14 open reading frame 37
Tissue enriched
Detected in many
pineal gland:
113.7
C15orf48
ENSSSCG00000004670
ENSG00000166920
Chromosome 15 open reading frame 48
Tissue enriched
Detected in many
large intestine:
98.8
C15orf59
ENSSSCG00000001916
ENSG00000205363
Chromosome 15 open reading frame 59
Tissue enhanced
Detected in many
brain:
33.5
heart:
32.0
skeletal muscle:
17.8
C16orf45
ENSSSCG00000032956
ENSG00000166780
Chromosome 16 open reading frame 45
Group enriched
Detected in many
brain:
44.4
pineal gland:
43.2
C16orf46
ENSSSCG00000035388
ENSG00000166455
Chromosome 16 open reading frame 46
Tissue enriched
Detected in many
testis:
58.9
C16orf54
ENSSSCG00000029752
ENSG00000185905
Chromosome 16 open reading frame 54
Tissue enhanced
Detected in many
lung:
33.0
lymphoid tissue:
38.1
C16orf74
ENSSSCG00000002662
ENSG00000154102
Chromosome 16 open reading frame 74
Tissue enhanced
Detected in all
cervix:
91.3
C16orf89
ENSSSCG00000025072
ENSG00000153446
Chromosome 16 open reading frame 89
Low tissue specificity
Detected in all
C17orf58
ENSSSCG00000032181
ENSG00000186665
Chromosome 17 open reading frame 58
Tissue enhanced
Detected in many
brain:
48.1
C17orf67
ENSSSCG00000030781
ENSG00000214226
Chromosome 17 open reading frame 67
Tissue enhanced
Detected in many
brain:
21.9
choroid plexus:
8.7
C1orf115
ENSSSCG00000027882
ENSG00000162817
Chromosome 1 open reading frame 115
Tissue enhanced
Detected in many
small intestine:
52.4
C1orf189
ENSSSCG00000006555
ENSG00000163263
Chromosome 1 open reading frame 189
Tissue enhanced
Detected in some
fallopian tube:
41.3
testis:
76.4
upper respiratory system:
63.5
C1orf198
ENSSSCG00000010181
ENSG00000119280
Chromosome 1 open reading frame 198
Tissue enhanced
Detected in all
brain:
51.1
C1orf210
ENSSSCG00000003951
ENSG00000253313
Chromosome 1 open reading frame 210
Tissue enhanced
Detected in many
kidney:
64.1
liver:
43.8
stomach:
40.6
C1QA
ENSSSCG00000003524
ENSG00000173372
Complement C1q subcomponent subunit A precursor
Tissue enhanced
Detected in all
lymphoid tissue:
142.8
synovial tissue:
77.9
C1QB
ENSSSCG00000033512
ENSG00000173369
Complement C1q subcomponent subunit B precursor
Tissue enhanced
Detected in many
lymphoid tissue:
125.8
synovial tissue:
91.1
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