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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RHOH
ENSSSCG00000008794
ENSG00000168421
Rho-related GTP-binding protein RhoH
Tissue enriched
Detected in many
lymphoid tissue:
70.4
RHOJ
ENSSSCG00000022804
ENSG00000126785
Rho-related GTP-binding protein RhoJ
Low tissue specificity
Detected in many
RHOQ
ENSSSCG00000031261
ENSG00000119729
Ras homolog family member Q
Low tissue specificity
Detected in all
RHOU
ENSSSCG00000024418
ENSG00000116574
Ras homolog family member U
Tissue enhanced
Detected in many
brain:
48.7
male glands:
31.4
RHPN2
ENSSSCG00000022312
ENSG00000131941
Rhophilin Rho GTPase binding protein 2
Tissue enhanced
Detected in many
male glands:
38.5
RIBC2
ENSSSCG00000024718
ENSG00000128408
RIB43A domain with coiled-coils 2
Tissue enhanced
Detected in some
fallopian tube:
23.1
lung:
8.4
testis:
8.2
upper respiratory system:
25.3
RICTOR
ENSSSCG00000016853
ENSG00000164327
RPTOR independent companion of MTOR complex 2
Low tissue specificity
Detected in all
RIIAD1
ENSSSCG00000040872
ENSG00000178796
RIIa domain-containing protein 1
Tissue enhanced
Detected in many
choroid plexus:
19.5
pineal gland:
24.8
testis:
27.2
RILPL1
ENSSSCG00000009773
ENSG00000188026
Rab interacting lysosomal protein like 1
Tissue enhanced
Detected in all
heart:
50.6
RILPL2
ENSSSCG00000009778
ENSG00000150977
Rab interacting lysosomal protein like 2
Low tissue specificity
Detected in all
RIMBP2
ENSSSCG00000009748
ENSG00000060709
RIMS binding protein 2
Tissue enhanced
Detected in many
brain:
22.5
liver:
17.7
pituitary gland:
17.7
retina:
14.6
RIMKLA
ENSSSCG00000003968
ENSG00000177181
Ribosomal modification protein rimK like family member A
Tissue enhanced
Detected in many
brain:
16.0
lens:
8.9
mouth:
8.9
retina:
8.9
RIMS1
ENSSSCG00000004280
ENSG00000079841
Regulating synaptic membrane exocytosis 1
Tissue enhanced
Detected in many
brain:
171.7
lens:
92.5
RIMS3
ENSSSCG00000039245
ENSG00000117016
Regulating synaptic membrane exocytosis 3
Tissue enhanced
Detected in many
brain:
23.2
retina:
12.7
RIMS4
ENSSSCG00000021453
ENSG00000101098
Regulating synaptic membrane exocytosis 4
Tissue enriched
Detected in some
brain:
22.7
RINL
ENSSSCG00000022692
ENSG00000187994
Ras and Rab interactor like
Tissue enhanced
Detected in many
lymphoid tissue:
26.8
vagus nerve:
26.5
RIPOR2
ENSSSCG00000001097
ENSG00000111913
RHO family interacting cell polarization regulator 2
Tissue enhanced
Detected in many
lymphoid tissue:
61.4
RIPPLY2
ENSSSCG00000004451
ENSG00000203877
Ripply transcriptional repressor 2
Group enriched
Detected in some
brain:
31.9
cartilage:
12.3
pineal gland:
28.7
pituitary gland:
16.9
RLBP1
ENSSSCG00000001836
ENSG00000140522
Retinaldehyde binding protein 1
Tissue enhanced
Detected in all
brain:
29.0
retina:
67.7
RLN3
ENSSSCG00000013765
ENSG00000171136
Relaxin-3 Relaxin-3 B chain Relaxin-3 A chain
Tissue enhanced
Detected in many
brain:
33.5
RMND5A
ENSSSCG00000035478
ENSG00000153561
Required for meiotic nuclear division 5 homolog A
Low tissue specificity
Detected in all
RNASE1
ENSSSCG00000031649
ENSG00000129538
Ribonuclease pancreatic precursor
Tissue enhanced
Detected in many
brain:
72.9
stomach:
33.9
RND2
ENSSSCG00000029460
ENSG00000108830
Rho family GTPase 2
Tissue enriched
Detected in all
brain:
38.0
RND3
ENSSSCG00000040445
ENSG00000115963
Rho-related GTP-binding protein RhoE precursor
Low tissue specificity
Detected in all
RNF112
ENSSSCG00000034609
ENSG00000128482
Ring finger protein 112
Tissue enhanced
Detected in all
brain:
18.2
RNF122
ENSSSCG00000036062
ENSG00000133874
Ring finger protein 122
Low tissue specificity
Detected in all
RNF128
ENSSSCG00000012551
ENSG00000133135
Ring finger protein 128, E3 ubiquitin protein ligase
Tissue enhanced
Detected in many
brain:
45.6
pineal gland:
28.0
RNF13
ENSSSCG00000027459
ENSG00000082996
Ring finger protein 13
Tissue enhanced
Detected in all
brain:
76.9
RNF150
ENSSSCG00000009053
ENSG00000170153
Ring finger protein 150
Tissue enhanced
Detected in many
large intestine:
42.4
RNF152
ENSSSCG00000004902
ENSG00000176641
E3 ubiquitin-protein ligase RNF152
Tissue enhanced
Detected in many
choroid plexus:
60.0
kidney:
102.9
RNF157
ENSSSCG00000017186
ENSG00000141576
Ring finger protein 157
Tissue enhanced
Detected in all
brain:
38.2
stomach:
40.8
RNF165
ENSSSCG00000004502
ENSG00000141622
Ring finger protein 165
Tissue enhanced
Detected in many
brain:
17.2
RNF183
ENSSSCG00000027688
ENSG00000165188
Ring finger protein 183
Tissue enhanced
Detected in many
kidney:
22.7
RNF208
ENSSSCG00000005858
ENSG00000212864
Ring finger protein 208
Tissue enriched
Detected in many
brain:
28.7
RNF212B
ENSSSCG00000026237
ENSG00000215277
Ring finger protein 212B
Group enriched
Detected in some
brain:
11.6
kidney:
10.0
testis:
10.4
RNF39
ENSSSCG00000025208
ENSG00000204618
RING finger protein 39
Tissue enhanced
Detected in many
cornea:
42.2
RNF6
ENSSSCG00000024064
ENSG00000127870
Ring finger protein 6
Tissue enhanced
Detected in all
testis:
48.2
ROBO1
ENSSSCG00000012001
ENSG00000169855
Roundabout guidance receptor 1
Tissue enhanced
Detected in many
brain:
33.2
cartilage:
33.8
ovary:
33.1
ROBO2
ENSSSCG00000012002
ENSG00000185008
Roundabout guidance receptor 2
Tissue enhanced
Detected in many
brain:
27.0
retina:
23.6
ROPN1L
ENSSSCG00000022306
ENSG00000145491
Rhophilin associated tail protein 1 like
Tissue enhanced
Detected in many
fallopian tube:
54.9
testis:
67.2
upper respiratory system:
36.0
ROR2
ENSSSCG00000009593
ENSG00000169071
Receptor tyrosine kinase like orphan receptor 2
Tissue enhanced
Detected in many
cervix:
28.8
smooth muscle:
37.0
RORA
ENSSSCG00000004576
ENSG00000069667
RAR related orphan receptor A
Tissue enhanced
Detected in all
skin:
66.7
RORB
ENSSSCG00000005268
ENSG00000198963
RAR related orphan receptor B
Tissue enhanced
Detected in some
brain:
22.7
pineal gland:
29.5
pituitary gland:
17.1
retina:
66.5
RPH3A
ENSSSCG00000009883
ENSG00000089169
Rabphilin 3A
Group enriched
Detected in some
brain:
52.3
retina:
16.8
RPP25
ENSSSCG00000001888
ENSG00000178718
Ribonuclease P and MRP subunit p25
Group enriched
Detected in many
brain:
29.7
lens:
15.9
RPRM
ENSSSCG00000037225
ENSG00000177519
Reprimo, TP53 dependent G2 arrest mediator homolog
Group enriched
Detected in many
brain:
38.8
ductus deferens:
116.1
RPRML
ENSSSCG00000017320
ENSG00000179673
Reprimo like
Tissue enriched
Detected in some
brain:
82.7
RPS6KA1
ENSSSCG00000003558
ENSG00000117676
Ribosomal protein S6 kinase alpha-1
Tissue enhanced
Detected in many
large intestine:
38.7
RPS6KA2
ENSSSCG00000004022
ENSG00000071242
Ribosomal protein S6 kinase A2
Tissue enhanced
Detected in many
brain:
32.2
lens:
49.4
RPS6KA3
ENSSSCG00000012163
ENSG00000177189
Ribosomal protein S6 kinase A3
Tissue enhanced
Detected in all
male glands:
66.0
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