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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RBP1
ENSSSCG00000011664
ENSG00000114115
Retinol-binding protein 1
Tissue enhanced
Detected in many
choroid plexus:
50.2
cornea:
58.8
RBPMS2
ENSSSCG00000004549
ENSG00000166831
RNA binding protein, mRNA processing factor 2
Tissue enhanced
Detected in many
smooth muscle:
91.8
urinary bladder:
45.2
RCN3
ENSSSCG00000024823
ENSG00000142552
Reticulocalbin 3
Tissue enhanced
Detected in many
cartilage:
90.5
RCOR2
ENSSSCG00000013049
ENSG00000167771
REST corepressor 2
Tissue enhanced
Detected in many
cartilage:
37.3
RCVRN
ENSSSCG00000037991
ENSG00000109047
Recoverin
Group enriched
Detected in some
pineal gland:
139.1
retina:
128.1
RDH12
ENSSSCG00000002297
ENSG00000139988
Retinol dehydrogenase 12 precursor
Tissue enriched
Detected in some
testis:
191.0
RDH5
ENSSSCG00000000362
ENSG00000135437
Retinol dehydrogenase 5
Tissue enhanced
Detected in many
adipose tissue:
26.7
aorta:
30.2
brain:
23.6
choroid plexus:
16.3
RDX
ENSSSCG00000015013
ENSG00000137710
Radixin
Low tissue specificity
Detected in all
REC114
ENSSSCG00000039508
ENSG00000183324
REC114 meiotic recombination protein
Low tissue specificity
Detected in all
REEP1
ENSSSCG00000023710
ENSG00000068615
Receptor accessory protein 1
Tissue enhanced
Detected in many
brain:
26.5
lens:
63.7
REEP2
ENSSSCG00000014335
ENSG00000132563
Receptor accessory protein 2
Tissue enhanced
Detected in all
lens:
152.3
testis:
49.9
REEP3
ENSSSCG00000036476
ENSG00000165476
Receptor accessory protein 3
Tissue enhanced
Detected in all
brain:
69.5
REEP5
ENSSSCG00000022048
ENSG00000129625
Receptor accessory protein 5
Tissue enhanced
Detected in all
male glands:
120.6
REEP6
ENSSSCG00000026387
ENSG00000115255
Receptor accessory protein 6
Tissue enhanced
Detected in many
retina:
114.8
testis:
56.8
RELB
ENSSSCG00000038879
ENSG00000104856
RELB proto-oncogene, NF-kB subunit
Tissue enhanced
Detected in many
lymphoid tissue:
32.8
RELL1
ENSSSCG00000008772
ENSG00000181826
RELT like 1
Tissue enhanced
Detected in all
male glands:
82.5
RELL2
ENSSSCG00000014389
ENSG00000164620
RELT like 2
Tissue enriched
Detected in some
brain:
34.5
RELN
ENSSSCG00000015426
ENSG00000189056
Reelin
Group enriched
Detected in many
brain:
60.5
vagus nerve:
49.0
REM2
ENSSSCG00000031874
ENSG00000139890
RRAD and GEM like GTPase 2
Low tissue specificity
Detected in all
RENBP
ENSSSCG00000012792
ENSG00000102032
N-acylglucosamine 2-epimerase
Tissue enhanced
Detected in all
kidney:
50.4
REPS2
ENSSSCG00000012150
ENSG00000169891
RALBP1 associated Eps domain containing 2
Tissue enhanced
Detected in many
brain:
30.8
RET
ENSSSCG00000010199
ENSG00000165731
Ret proto-oncogene
Tissue enriched
Detected in many
brain:
52.4
REXO5
ENSSSCG00000007855
ENSG00000005189
RNA exonuclease 5
Tissue enriched
Detected in all
testis:
117.1
RFK
ENSSSCG00000037277
ENSG00000135002
Riboflavin kinase
Tissue enhanced
Detected in all
male glands:
81.3
RFLNA
ENSSSCG00000035760
ENSG00000178882
Refilin A
Tissue enhanced
Detected in many
ovary:
45.6
stomach:
91.4
RFLNB
ENSSSCG00000038618
ENSG00000183688
Refilin B
Low tissue specificity
Detected in many
RFTN1
ENSSSCG00000011198
ENSG00000131378
Raftlin, lipid raft linker 1
Tissue enhanced
Detected in many
lymphoid tissue:
43.9
RFTN2
ENSSSCG00000037483
ENSG00000162944
Raftlin family member 2
Tissue enhanced
Detected in many
brain:
56.8
cartilage:
44.8
RFX2
ENSSSCG00000035403
ENSG00000087903
Regulatory factor X2
Tissue enhanced
Detected in many
skin:
50.4
testis:
56.2
RFX3
ENSSSCG00000005225
ENSG00000080298
Regulatory factor X3
Tissue enhanced
Detected in all
brain:
40.2
RGR
ENSSSCG00000010350
ENSG00000148604
Retinal G protein coupled receptor
Tissue enriched
Detected in some
retina:
97.6
RGS1
ENSSSCG00000032416
ENSG00000090104
Regulator of G protein signaling 1
Tissue enhanced
Detected in many
lymphoid tissue:
32.2
RGS14
ENSSSCG00000014039
ENSG00000169220
Regulator of G protein signaling 14
Tissue enhanced
Detected in all
brain:
54.2
lymphoid tissue:
23.2
RGS16
ENSSSCG00000015550
ENSG00000143333
Regulator of G protein signaling 16
Tissue enhanced
Detected in many
brain:
52.3
liver:
29.1
RGS17
ENSSSCG00000004075
ENSG00000091844
Regulator of G protein signaling 17
Tissue enriched
Detected in some
brain:
16.3
RGS2
ENSSSCG00000037241
ENSG00000116741
Regulator of G-protein signaling 2
Tissue enhanced
Detected in all
ductus deferens:
67.9
RGS22
ENSSSCG00000006069
ENSG00000132554
Regulator of G protein signaling 22
Tissue enhanced
Detected in many
testis:
50.3
upper respiratory system:
21.4
RGS4
ENSSSCG00000006335
ENSG00000117152
Regulator of G-protein signaling 4
Group enriched
Detected in many
brain:
76.6
male glands:
55.6
RGS6
ENSSSCG00000033093
ENSG00000182732
Regulator of G protein signaling 6
Tissue enhanced
Detected in many
brain:
18.1
heart:
15.1
male glands:
31.5
RGS7BP
ENSSSCG00000033581
ENSG00000186479
Regulator of G-protein signaling 7-binding protein
Tissue enhanced
Detected in some
brain:
34.7
retina:
9.5
RGS8
ENSSSCG00000039986
ENSG00000135824
Regulator of G protein signaling 8
Group enriched
Detected in some
brain:
32.8
heart:
17.8
pineal gland:
11.6
retina:
18.0
RGS9
ENSSSCG00000035402
ENSG00000108370
Regulator of G protein signaling 9
Group enriched
Detected in many
brain:
42.3
retina:
40.0
RGSL1
ENSSSCG00000015548
ENSG00000121446
Regulator of G protein signaling like 1
Group enriched
Detected in many
epididymis:
40.1
testis:
14.4
RHBDD2
ENSSSCG00000040182
ENSG00000005486
Rhomboid domain containing 2
Tissue enhanced
Detected in all
brain:
39.2
RHBDL2
ENSSSCG00000003651
ENSG00000158315
Rhomboid-related protein 2
Tissue enriched
Detected in all
brain:
54.9
RHBDL3
ENSSSCG00000017734
ENSG00000141314
Rhomboid like 3
Tissue enhanced
Detected in many
retina:
38.4
vagus nerve:
17.0
RHOBTB1
ENSSSCG00000028327
ENSG00000072422
Rho related BTB domain containing 1
Tissue enhanced
Detected in all
kidney:
43.5
male glands:
60.1
RHOBTB3
ENSSSCG00000029805
ENSG00000164292
Rho related BTB domain containing 3
Tissue enriched
Detected in many
lens:
157.9
RHOC
ENSSSCG00000006777
ENSG00000155366
Ras homolog family member C
Low tissue specificity
Detected in all
RHOG
ENSSSCG00000039656
ENSG00000177105
Rho-related GTP-binding protein RhoG
Tissue enhanced
Detected in many
lens:
158.9
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