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Variability
Variable
Not variable
Tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
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Cornea
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Dura mater
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Lung
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Mesothelial tissue
Mouth
Ovary
Penis
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Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RAB15
ENSSSCG00000002280
ENSG00000139998
RAB15, member RAS oncogene family
Tissue enriched
Detected in many
lens:
89.5
RAB1B
ENSSSCG00000012954
ENSG00000174903
Ras-related protein Rab-1B
Tissue enhanced
Detected in all
brain:
108.6
RAB26
ENSSSCG00000033691
ENSG00000167964
RAB26, member RAS oncogene family
Low tissue specificity
Detected in all
RAB27A
ENSSSCG00000004612
ENSG00000069974
Ras-related protein Rab-27A
Tissue enhanced
Detected in all
pituitary gland:
55.5
RAB27B
ENSSSCG00000035243
ENSG00000041353
RAB27B, member RAS oncogene family
Tissue enhanced
Detected in many
male glands:
114.3
salivary gland:
34.9
RAB31
ENSSSCG00000037264
ENSG00000168461
RAB31, member RAS oncogene family
Low tissue specificity
Detected in many
RAB33A
ENSSSCG00000012658
ENSG00000134594
Ras-related protein Rab-33A
Tissue enhanced
Detected in all
brain:
18.0
RAB37
ENSSSCG00000017233
ENSG00000172794
RAB37, member RAS oncogene family
Tissue enhanced
Detected in many
lymphoid tissue:
47.2
stomach:
16.1
RAB3A
ENSSSCG00000013897
ENSG00000105649
Ras-related protein Rab-3A
Group enriched
Detected in many
brain:
78.0
pineal gland:
32.7
retina:
28.3
RAB3B
ENSSSCG00000021036
ENSG00000169213
RAB3B, member RAS oncogene family
Group enriched
Detected in many
brain:
27.9
gallbladder:
16.1
pituitary gland:
40.4
stomach:
19.3
RAB3D
ENSSSCG00000016928
ENSG00000105514
RAB3D, member RAS oncogene family
Low tissue specificity
Detected in many
RAB3IP
ENSSSCG00000000500
ENSG00000127328
RAB3A interacting protein
Tissue enhanced
Detected in all
choroid plexus:
60.5
RAB6B
ENSSSCG00000036503
ENSG00000154917
RAB6B, member RAS oncogene family
Tissue enriched
Detected in many
brain:
57.2
RAB7B
ENSSSCG00000036352
ENSG00000276600
RAB7B, member RAS oncogene family
Tissue enhanced
Detected in all
brain:
36.6
RAB9B
ENSSSCG00000032672
ENSG00000123570
RAB9B, member RAS oncogene family
Tissue enhanced
Detected in some
brain:
18.8
heart:
22.4
pituitary gland:
6.7
RAD51B
ENSSSCG00000028877
ENSG00000182185
RAD51 paralog B
Low tissue specificity
Detected in all
RAD9B
ENSSSCG00000009824
ENSG00000151164
RAD9 checkpoint clamp component B
Low tissue specificity
Detected in all
RAI14
ENSSSCG00000016824
ENSG00000039560
Ankycorbin
Low tissue specificity
Detected in all
RAMP1
ENSSSCG00000016331
ENSG00000132329
Receptor activity-modifying protein 1
Tissue enhanced
Detected in many
heart:
145.3
skeletal muscle:
82.5
RAMP2
ENSSSCG00000017389
ENSG00000131477
Receptor activity-modifying protein 2 precursor
Low tissue specificity
Detected in many
RAMP3
ENSSSCG00000031144
ENSG00000122679
Receptor activity-modifying protein 3 precursor
Tissue enhanced
Detected in many
brain:
36.7
pineal gland:
12.1
RANBP3L
ENSSSCG00000016838
ENSG00000164188
RAN binding protein 3 like
Tissue enriched
Detected in many
kidney:
94.2
RAP1GAP
ENSSSCG00000022029
ENSG00000076864
RAP1 GTPase activating protein
Tissue enhanced
Detected in many
brain:
81.1
male glands:
31.9
salivary gland:
29.6
RAP1GAP2
ENSSSCG00000034858
ENSG00000132359
RAP1 GTPase activating protein 2
Tissue enhanced
Detected in many
brain:
34.0
RAPGEF3
ENSSSCG00000023526
ENSG00000079337
Rap guanine nucleotide exchange factor 3
Low tissue specificity
Detected in many
RAPGEF4
ENSSSCG00000015959
ENSG00000091428
Rap guanine nucleotide exchange factor 4
Tissue enhanced
Detected in many
adrenal gland:
41.6
brain:
35.4
RAPGEF5
ENSSSCG00000015383
ENSG00000136237
Rap guanine nucleotide exchange factor 5
Tissue enhanced
Detected in all
brain:
67.0
RARB
ENSSSCG00000011212
ENSG00000077092
Retinoic acid receptor beta
Low tissue specificity
Detected in all
RARRES2
ENSSSCG00000035419
ENSG00000106538
Retinoic acid receptor responder protein 2 precursor
Tissue enhanced
Detected in all
kidney:
123.4
liver:
125.8
RASA3
ENSSSCG00000009567
ENSG00000185989
RAS p21 protein activator 3
Low tissue specificity
Detected in all
RASAL3
ENSSSCG00000013839
ENSG00000105122
RAS protein activator like 3
Tissue enhanced
Detected in many
lymphoid tissue:
28.7
stomach:
16.5
RASD2
ENSSSCG00000031155
ENSG00000100302
RASD family member 2
Tissue enriched
Detected in many
brain:
82.9
RASGEF1A
ENSSSCG00000010201
ENSG00000198915
RasGEF domain family member 1A
Group enriched
Detected in all
brain:
22.9
vagus nerve:
14.0
RASGEF1B
ENSSSCG00000029507
ENSG00000138670
Ras-GEF domain-containing family member 1B
Low tissue specificity
Detected in all
RASGRF1
ENSSSCG00000001771
ENSG00000058335
Ras protein specific guanine nucleotide releasing factor 1
Tissue enhanced
Detected in some
brain:
27.0
cornea:
52.3
pineal gland:
12.7
RASGRP2
ENSSSCG00000013023
ENSG00000068831
RAS guanyl-releasing protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
48.8
RASGRP3
ENSSSCG00000008509
ENSG00000152689
RAS guanyl releasing protein 3
Tissue enhanced
Detected in all
lymphoid tissue:
48.3
RASL10B
ENSSSCG00000036746
ENSG00000270885
RAS like family 10 member B
Tissue enhanced
Detected in many
brain:
32.6
heart:
23.2
RASL11B
ENSSSCG00000008835
ENSG00000128045
RAS like family 11 member B
Tissue enhanced
Detected in all
cartilage:
59.1
RASSF10
ENSSSCG00000022060
ENSG00000189431
Ras association domain family member 10
Tissue enhanced
Detected in many
male glands:
27.2
RASSF2
ENSSSCG00000032601
ENSG00000101265
Ras association domain family member 2
Tissue enhanced
Detected in all
dura mater:
59.9
RASSF4
ENSSSCG00000029662
ENSG00000107551
Ras association domain-containing protein 4
Low tissue specificity
Detected in all
RASSF5
ENSSSCG00000031970
ENSG00000266094
Ras association domain family member 5
Tissue enhanced
Detected in many
lymphoid tissue:
46.0
salivary gland:
33.0
RASSF8
ENSSSCG00000000559
ENSG00000123094
Ras association domain family member 8
Low tissue specificity
Detected in all
RASSF9
ENSSSCG00000034948
ENSG00000198774
Ras association domain family member 9
Low tissue specificity
Detected in all
RBFOX1
ENSSSCG00000007917
ENSG00000078328
RNA binding fox-1 homolog 1
Tissue enhanced
Detected in some
brain:
53.7
ductus deferens:
21.4
pineal gland:
18.5
skeletal muscle:
30.0
RBFOX2
ENSSSCG00000000152
ENSG00000100320
RNA binding protein fox-1 homolog 2
Low tissue specificity
Detected in all
RBM11
ENSSSCG00000037517
ENSG00000185272
RNA binding motif protein 11
Tissue enhanced
Detected in some
brain:
10.0
epididymis:
5.8
pineal gland:
7.7
pituitary gland:
6.0
RBM46
ENSSSCG00000008994
ENSG00000151962
RNA binding motif protein 46
Tissue enhanced
Detected in all
testis:
42.8
RBMS3
ENSSSCG00000036381
ENSG00000144642
RNA binding motif single stranded interacting protein 3
Low tissue specificity
Detected in many
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