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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ATP2B2
ENSSSCG00000023084
ENSG00000157087
ATPase plasma membrane Ca2+ transporting 2
Group enriched
Detected in some
brain:
74.8
choroid plexus:
38.2
ATP2B3
ENSSSCG00000012769
ENSG00000067842
ATPase plasma membrane Ca2+ transporting 3
Group enriched
Detected in some
adrenal gland:
25.3
brain:
25.9
choroid plexus:
33.3
ductus deferens:
15.0
pituitary gland:
13.8
ATP6
ENSSSCG00000018081
ENSG00000198899
ATP synthase subunit a
Tissue enhanced
Detected in all
heart:
1899.7
ATP6V1C2
ENSSSCG00000008634
ENSG00000143882
ATPase H+ transporting V1 subunit C2
Tissue enhanced
Detected in many
brain:
22.5
epididymis:
24.1
male glands:
48.7
ATP8
ENSSSCG00000018080
ENSG00000228253
ATP synthase protein 8
Tissue enhanced
Detected in all
heart:
1761.6
ATP8A1
ENSSSCG00000008803
ENSG00000124406
ATPase phospholipid transporting 8A1
Tissue enhanced
Detected in many
brain:
57.6
retina:
35.6
vagus nerve:
42.2
ATP8A2
ENSSSCG00000035421
ENSG00000132932
ATPase phospholipid transporting 8A2
Tissue enhanced
Detected in all
brain:
29.4
pineal gland:
18.8
retina:
56.1
ATP8B4
ENSSSCG00000004646
ENSG00000104043
ATPase phospholipid transporting 8B4 (putative)
Tissue enhanced
Detected in many
kidney:
24.9
ATRNL1
ENSSSCG00000010654
ENSG00000107518
Attractin like 1
Tissue enhanced
Detected in all
brain:
45.9
ATXN1
ENSSSCG00000001065
ENSG00000124788
Ataxin 1
Low tissue specificity
Detected in all
AURKB
ENSSSCG00000028924
ENSG00000178999
Aurora kinase B
Tissue enhanced
Detected in many
lymphoid tissue:
31.7
AURKC
ENSSSCG00000034174
ENSG00000105146
Aurora kinase C
Tissue enhanced
Detected in all
testis:
36.7
AVP
ENSSSCG00000007163
ENSG00000101200
Vasopressin-neurophysin 2-copeptin precursor
Tissue enriched
Detected in some
brain:
151.7
AVPI1
ENSSSCG00000036824
ENSG00000119986
Arginine vasopressin induced 1
Tissue enhanced
Detected in all
adrenal gland:
34.4
ovary:
38.7
AVPR2
ENSSSCG00000012789
ENSG00000126895
Vasopressin V2 receptor
Tissue enhanced
Detected in many
ductus deferens:
10.9
kidney:
16.5
male glands:
19.8
B2M
ENSSSCG00000004687
ENSG00000166710
Beta-2-microglobulin
Low tissue specificity
Detected in all
B3GALT1
ENSSSCG00000034351
ENSG00000172318
Beta-1,3-galactosyltransferase 1
Tissue enhanced
Detected in many
brain:
14.8
choroid plexus:
19.4
B3GALT5
ENSSSCG00000038056
ENSG00000183778
Beta-1,3-galactosyltransferase 5
Tissue enhanced
Detected in all
esophagus:
40.8
large intestine:
45.5
stomach:
56.6
B3GAT1
ENSSSCG00000015259
ENSG00000109956
Beta-1,3-glucuronyltransferase 1
Tissue enhanced
Detected in some
brain:
50.2
vagus nerve:
28.5
B3GAT2
ENSSSCG00000026246
ENSG00000112309
Beta-1,3-glucuronyltransferase 2
Tissue enhanced
Detected in many
brain:
13.5
retina:
11.3
B3GLCT
ENSSSCG00000009335
ENSG00000187676
Beta 3-glucosyltransferase
Low tissue specificity
Detected in all
B3GNT2
ENSSSCG00000008374
ENSG00000170340
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2
Low tissue specificity
Detected in all
B3GNT4
ENSSSCG00000009798
ENSG00000176383
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
Tissue enhanced
Detected in many
fallopian tube:
37.4
lung:
26.9
upper respiratory system:
15.5
B3GNT9
ENSSSCG00000040139
ENSG00000237172
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
Tissue enhanced
Detected in all
cartilage:
37.5
B4GALNT3
ENSSSCG00000033412
ENSG00000139044
Beta-1,4-N-acetyl-galactosaminyltransferase 3
Tissue enhanced
Detected in many
cartilage:
48.3
male glands:
38.6
vagus nerve:
27.0
B4GALNT4
ENSSSCG00000033780
ENSG00000182272
Beta-1,4-N-acetyl-galactosaminyltransferase 4
Tissue enhanced
Detected in some
brain:
10.7
fallopian tube:
4.4
B4GALT6
ENSSSCG00000025005
ENSG00000118276
Beta-1,4-galactosyltransferase 6
Tissue enhanced
Detected in many
brain:
26.8
cartilage:
11.4
ovary:
13.8
pituitary gland:
12.2
B4GAT1
ENSSSCG00000012940
ENSG00000174684
Beta-1,4-glucuronyltransferase 1
Tissue enhanced
Detected in many
brain:
41.1
BAG3
ENSSSCG00000010686
ENSG00000151929
BCL2 associated athanogene 3
Tissue enhanced
Detected in all
skeletal muscle:
118.3
BAIAP2L2
ENSSSCG00000000111
ENSG00000128298
BAI1 associated protein 2 like 2
Tissue enhanced
Detected in many
epididymis:
25.4
kidney:
40.6
large intestine:
45.5
small intestine:
45.7
BAIAP3
ENSSSCG00000008029
ENSG00000007516
BAI1 associated protein 3
Tissue enhanced
Detected in many
brain:
36.9
pituitary gland:
26.1
BARHL1
ENSSSCG00000005730
ENSG00000125492
BarH like homeobox 1
Tissue enriched
Detected in single
brain:
17.2
BARHL2
ENSSSCG00000006914
ENSG00000143032
BarH like homeobox 2
Tissue enriched
Detected in some
brain:
33.7
BAZ1A
ENSSSCG00000001958
ENSG00000198604
Bromodomain adjacent to zinc finger domain protein 1A
Low tissue specificity
Detected in many
BBOX1
ENSSSCG00000013337
ENSG00000129151
Gamma-butyrobetaine hydroxylase 1
Tissue enhanced
Detected in some
brain:
16.3
kidney:
49.8
liver:
20.6
BCAR1
ENSSSCG00000028878
ENSG00000050820
BCAR1, Cas family scaffolding protein
Tissue enhanced
Detected in all
kidney:
80.1
BCL11A
ENSSSCG00000008392
ENSG00000119866
B-cell lymphoma/leukemia 11A
Tissue enhanced
Detected in many
brain:
38.0
lymphoid tissue:
26.5
BCL2L11
ENSSSCG00000022322
ENSG00000153094
Bcl-2-like protein 11 isoform 1
Low tissue specificity
Detected in all
BCL6
ENSSSCG00000011810
ENSG00000113916
B-cell lymphoma 6 protein
Low tissue specificity
Detected in all
BDNF
ENSSSCG00000013333
ENSG00000176697
Brain-derived neurotrophic factor
Tissue enhanced
Detected in many
brain:
18.1
pituitary gland:
7.9
BEAN1
ENSSSCG00000033191
ENSG00000166546
Brain expressed associated with NEDD4 1
Tissue enhanced
Detected in many
brain:
11.2
BEGAIN
ENSSSCG00000036589
ENSG00000183092
Brain enriched guanylate kinase associated
Tissue enriched
Detected in some
brain:
27.2
BEND4
ENSSSCG00000008802
ENSG00000188848
BEN domain containing 4
Tissue enhanced
Detected in some
cartilage:
50.4
epididymis:
20.3
kidney:
12.3
male glands:
17.5
BEST4
ENSSSCG00000003929
ENSG00000142959
Bestrophin 4
Low tissue specificity
Detected in all
BEX5
ENSSSCG00000012514
ENSG00000184515
Brain expressed X-linked 5
Tissue enhanced
Detected in some
brain:
15.5
epididymis:
16.7
pineal gland:
13.7
pituitary gland:
42.9
BFSP2
ENSSSCG00000011636
ENSG00000170819
Beaded filament structural protein 2
Tissue enriched
Detected in single
lens:
638.0
BGN
ENSSSCG00000012766
ENSG00000182492
Biglycan
Tissue enhanced
Detected in many
cartilage:
481.4
synovial tissue:
137.3
BHLHB9
ENSSSCG00000012520
ENSG00000198908
Basic helix-loop-helix family member b9
Tissue enhanced
Detected in many
brain:
43.7
lens:
21.6
pituitary gland:
44.8
BICD1
ENSSSCG00000000531
ENSG00000151746
BICD cargo adaptor 1
Tissue enhanced
Detected in many
brain:
42.1
BIN1
ENSSSCG00000015720
ENSG00000136717
Myc box-dependent-interacting protein 1
Tissue enhanced
Detected in all
brain:
87.5
skeletal muscle:
140.3
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