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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
13
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
OR51I1
ENSSSCG00000034777
ENSG00000167359
Olfactory receptor family 51 subfamily I member 1
Group enriched
Detected in some
brain:
10.1
endometrium:
10.2
ORAI2
ENSSSCG00000023912
ENSG00000160991
ORAI calcium release-activated calcium modulator 2
Low tissue specificity
Detected in all
OSBP2
ENSSSCG00000010015
ENSG00000184792
Oxysterol binding protein 2
Group enriched
Detected in some
brain:
16.1
lens:
22.2
retina:
60.4
testis:
40.6
OSBPL10
ENSSSCG00000011230
ENSG00000144645
Oxysterol binding protein like 10
Tissue enhanced
Detected in all
testis:
40.0
OSBPL5
ENSSSCG00000012862
ENSG00000021762
Oxysterol binding protein like 5
Low tissue specificity
Detected in all
OSBPL6
ENSSSCG00000023133
ENSG00000079156
Oxysterol binding protein like 6
Low tissue specificity
Detected in all
OSCP1
ENSSSCG00000036709
ENSG00000116885
Organic solute carrier partner 1
Tissue enhanced
Detected in many
choroid plexus:
26.6
OSR1
ENSSSCG00000008606
ENSG00000143867
Odd-skipped related transciption factor 1
Tissue enhanced
Detected in many
urinary bladder:
50.0
OTOF
ENSSSCG00000037751
ENSG00000115155
Otoferlin
Tissue enriched
Detected in some
brain:
15.1
OTOGL
ENSSSCG00000000943
ENSG00000165899
Otogelin like
Tissue enriched
Detected in some
ductus deferens:
41.3
OTOS
ENSSSCG00000039496
ENSG00000178602
Otospiralin
Group enriched
Detected in many
brain:
26.2
epididymis:
7.8
male glands:
14.0
OTP
ENSSSCG00000014099
ENSG00000171540
Orthopedia homeobox
Tissue enriched
Detected in single
brain:
25.1
OTUD7B
ENSSSCG00000006663
ENSG00000264522
OTU deubiquitinase 7B
Low tissue specificity
Detected in all
OVCH1
ENSSSCG00000000540
ENSG00000187950
Ovochymase 1
Tissue enhanced
Detected in many
brain:
8.9
male glands:
8.3
OXR1
ENSSSCG00000006037
ENSG00000164830
Oxidation resistance 1
Tissue enhanced
Detected in all
brain:
55.0
OXT
ENSSSCG00000007164
ENSG00000101405
Oxytocin-neurophysin 1 Oxytocin Neurophysin 1
Tissue enriched
Detected in some
brain:
257.2
P14ARF
ENSSSCG00000005134
ENSG00000147889
P14ARF protein
Tissue enriched
Detected in many
testis:
66.5
P2RY12
ENSSSCG00000011713
ENSG00000169313
P2Y purinoceptor 12
Tissue enhanced
Detected in many
brain:
35.2
pineal gland:
16.4
P2RY13
ENSSSCG00000032162
ENSG00000181631
Purinergic receptor P2Y13
Tissue enhanced
Detected in many
choroid plexus:
13.6
lymphoid tissue:
29.5
P2RY2
ENSSSCG00000040207
ENSG00000175591
P2Y purinoceptor 2
Tissue enhanced
Detected in many
vagus nerve:
52.1
P2RY6
ENSSSCG00000014823
ENSG00000171631
P2Y purinoceptor 6
Tissue enhanced
Detected in many
ovary:
12.5
P3H2
ENSSSCG00000011813
ENSG00000090530
Prolyl 3-hydroxylase 2
Tissue enhanced
Detected in many
lens:
66.7
P3H3
ENSSSCG00000000681
ENSG00000110811
Prolyl 3-hydroxylase 3
Tissue enhanced
Detected in many
cartilage:
48.2
P3H4
ENSSSCG00000017429
ENSG00000141696
Prolyl 3-hydroxylase family member 4 (non-enzymatic)
Low tissue specificity
Detected in many
P4HA2
ENSSSCG00000020915
ENSG00000072682
Prolyl 4-hydroxylase subunit alpha 2
Low tissue specificity
Detected in all
P4HA3
ENSSSCG00000014840
ENSG00000149380
Prolyl 4-hydroxylase subunit alpha 3
Tissue enhanced
Detected in many
cartilage:
54.1
dura mater:
25.6
PACSIN1
ENSSSCG00000027053
ENSG00000124507
Protein kinase C and casein kinase substrate in neurons 1
Group enriched
Detected in many
brain:
36.8
pineal gland:
17.0
retina:
28.3
PACSIN3
ENSSSCG00000013244
ENSG00000165912
Protein kinase C and casein kinase substrate in neurons 3
Tissue enhanced
Detected in many
lens:
79.7
skeletal muscle:
53.7
PAFAH1B3
ENSSSCG00000029070
ENSG00000079462
Platelet activating factor acetylhydrolase 1b catalytic subunit 3
Tissue enhanced
Detected in all
brain:
54.1
PAH
ENSSSCG00000000856
ENSG00000171759
Phenylalanine hydroxylase
Tissue enriched
Detected in some
liver:
213.5
PAK1
ENSSSCG00000014878
ENSG00000149269
P21 (RAC1) activated kinase 1
Tissue enriched
Detected in all
brain:
75.9
PAK3
ENSSSCG00000025306
ENSG00000077264
P21 (RAC1) activated kinase 3
Tissue enhanced
Detected in many
brain:
35.9
ductus deferens:
43.4
male glands:
39.4
PAK5
ENSSSCG00000007061
ENSG00000101349
P21 (RAC1) activated kinase 5
Tissue enhanced
Detected in some
brain:
17.3
ovary:
5.2
retina:
12.9
PALM2
ENSSSCG00000033120
ENSG00000157654,ENSG00000241978
A-kinase anchor protein 2
Tissue enriched
Detected in all
lens:
233.6
PALMD
ENSSSCG00000006874
ENSG00000099260
Palmdelphin
Low tissue specificity
Detected in many
PAM
ENSSSCG00000014184
ENSG00000145730
Peptidylglycine alpha-amidating monooxygenase
Tissue enhanced
Detected in all
cartilage:
159.1
heart:
115.9
PAMR1
ENSSSCG00000028338
ENSG00000149090
Inactive serine protease PAMR1 precursor
Tissue enhanced
Detected in many
brain:
29.4
PANK1
ENSSSCG00000010456
ENSG00000152782
Pantothenate kinase 1
Tissue enhanced
Detected in all
liver:
40.5
male glands:
36.0
PANX2
ENSSSCG00000000975
ENSG00000073150
Pannexin 2
Tissue enhanced
Detected in many
brain:
28.5
PAPPA
ENSSSCG00000005498
ENSG00000182752
Pappalysin 1
Tissue enhanced
Detected in many
cartilage:
64.8
PAQR4
ENSSSCG00000026248
ENSG00000162073
Progestin and adipoQ receptor family member 4
Tissue enhanced
Detected in many
brain:
14.9
retina:
19.5
PAQR5
ENSSSCG00000004968
ENSG00000137819
Progestin and adipoQ receptor family member 5
Tissue enhanced
Detected in many
adrenal gland:
46.4
kidney:
53.5
lens:
30.5
testis:
84.8
PAQR7
ENSSSCG00000003551
ENSG00000182749
Membrane progestin receptor alpha
Tissue enhanced
Detected in many
brain:
15.8
testis:
21.3
PAQR9
ENSSSCG00000011685
ENSG00000188582
Progestin and adipoQ receptor family member 9
Tissue enhanced
Detected in some
heart:
10.3
liver:
11.6
ovary:
15.5
retina:
13.4
testis:
25.3
PARD3B
ENSSSCG00000016123
ENSG00000116117
Par-3 family cell polarity regulator beta
Low tissue specificity
Detected in all
PARD6A
ENSSSCG00000034863
ENSG00000102981
Par-6 family cell polarity regulator alpha
Tissue enhanced
Detected in many
brain:
11.1
PARM1
ENSSSCG00000008966
ENSG00000169116
Prostate androgen-regulated mucin-like protein 1 precursor
Tissue enhanced
Detected in all
pineal gland:
103.9
PARP12
ENSSSCG00000016502
ENSG00000059378
Poly(ADP-ribose) polymerase family member 12
Low tissue specificity
Detected in many
PARP14
ENSSSCG00000011874
ENSG00000173193
Poly(ADP-ribose) polymerase family member 14
Tissue enhanced
Detected in many
lymphoid tissue:
27.1
small intestine:
35.3
PARVA
ENSSSCG00000028827
ENSG00000197702
Parvin alpha
Tissue enhanced
Detected in all
smooth muscle:
89.0
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