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Gene name
Human disease related genes
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UMAP gene cluster
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Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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4635 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NDST3
ENSSSCG00000009115
ENSG00000164100
N-deacetylase and N-sulfotransferase 3
Tissue enhanced
Detected in all
brain:
28.1
thyroid gland:
26.9
NDST4
ENSSSCG00000033834
ENSG00000138653
N-deacetylase and N-sulfotransferase 4
Tissue enhanced
Detected in some
brain:
32.2
ovary:
9.1
NEB
ENSSSCG00000016397
ENSG00000183091
Nebulin
Tissue enriched
Detected in some
skeletal muscle:
369.6
NECAB1
ENSSSCG00000031424
ENSG00000123119
N-terminal EF-hand calcium binding protein 1
Group enriched
Detected in some
brain:
22.1
epididymis:
9.4
NECAB2
ENSSSCG00000038048
ENSG00000103154
N-terminal EF-hand calcium binding protein 2
Tissue enriched
Detected in some
brain:
61.6
NECAB3
ENSSSCG00000029626
ENSG00000125967
N-terminal EF-hand calcium binding protein 3
Tissue enhanced
Detected in many
brain:
24.0
NEDD4
ENSSSCG00000037499
ENSG00000069869
Neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
Low tissue specificity
Detected in all
NEFH
ENSSSCG00000009979
ENSG00000100285
Neurofilament heavy
Tissue enriched
Detected in some
brain:
168.4
NEFL
ENSSSCG00000009649
ENSG00000277586
Neurofilament light polypeptide
Group enriched
Detected in some
brain:
146.6
retina:
47.6
NEFM
ENSSSCG00000009648
ENSG00000104722
Neurofilament medium
Group enriched
Detected in some
adrenal gland:
63.7
brain:
122.6
NEGR1
ENSSSCG00000025085
ENSG00000172260
Neuronal growth regulator 1
Tissue enhanced
Detected in many
brain:
65.6
pineal gland:
21.1
pituitary gland:
20.4
retina:
20.9
NEIL3
ENSSSCG00000015771
ENSG00000109674
Nei like DNA glycosylase 3
Tissue enhanced
Detected in many
adrenal gland:
13.5
lymphoid tissue:
13.5
NEK10
ENSSSCG00000011217
ENSG00000163491
NIMA related kinase 10
Tissue enhanced
Detected in many
fallopian tube:
24.2
lung:
17.1
testis:
14.7
upper respiratory system:
24.8
NEK11
ENSSSCG00000011181
ENSG00000114670
NIMA related kinase 11
Tissue enhanced
Detected in many
choroid plexus:
19.0
fallopian tube:
18.4
NEK5
ENSSSCG00000009380
ENSG00000197168
NIMA related kinase 5
Tissue enhanced
Detected in many
choroid plexus:
27.1
fallopian tube:
44.6
NEK7
ENSSSCG00000010904
ENSG00000151414
NIMA related kinase 7
Low tissue specificity
Detected in all
NELL1
ENSSSCG00000039940
ENSG00000165973
Neural EGFL like 1
Tissue enhanced
Detected in many
brain:
22.0
pineal gland:
18.5
NES
ENSSSCG00000006474
ENSG00000132688
Nestin
Group enriched
Detected in many
heart:
67.3
vagus nerve:
30.4
NET1
ENSSSCG00000023105
ENSG00000173848
Neuroepithelial cell transforming 1
Low tissue specificity
Detected in all
NETO2
ENSSSCG00000026318
ENSG00000171208
Neuropilin and tolloid like 2
Group enriched
Detected in many
brain:
27.2
cartilage:
76.4
NEURL1
ENSSSCG00000010603
ENSG00000107954
Neuralized E3 ubiquitin protein ligase 1
Tissue enhanced
Detected in many
skeletal muscle:
59.4
NEUROD1
ENSSSCG00000016011
ENSG00000162992
Neuronal differentiation 1
Group enriched
Detected in some
brain:
90.5
pineal gland:
64.9
retina:
43.6
NEUROD4
ENSSSCG00000035778
ENSG00000123307
Neuronal differentiation 4
Tissue enriched
Detected in some
pineal gland:
114.2
NEUROD6
ENSSSCG00000039501
ENSG00000164600
Neuronal differentiation 6
Tissue enriched
Detected in single
brain:
49.9
NEUROG1
ENSSSCG00000014309
ENSG00000181965
Neurogenin 1
Tissue enriched
Detected in some
pineal gland:
35.6
NEUROG2
ENSSSCG00000033479
ENSG00000178403
Neurogenin 2
Group enriched
Detected in some
brain:
18.1
pineal gland:
15.5
retina:
17.5
NEXMIF
ENSSSCG00000035689
ENSG00000050030
Neurite extension and migration factor
Tissue enhanced
Detected in some
brain:
14.2
pituitary gland:
8.0
NFAM1
ENSSSCG00000037425
ENSG00000235568
NFAT activating protein with ITAM motif 1
Tissue enhanced
Detected in many
lung:
16.0
synovial tissue:
13.2
NFASC
ENSSSCG00000022951
ENSG00000163531
Neurofascin
Tissue enhanced
Detected in some
brain:
47.9
pineal gland:
18.3
vagus nerve:
46.6
NFATC2
ENSSSCG00000007477
ENSG00000101096
Nuclear factor of activated T-cells, cytoplasmic 2
Tissue enhanced
Detected in many
cartilage:
117.5
NFE2L3
ENSSSCG00000026894
ENSG00000050344
Nuclear factor, erythroid 2 like 3
Low tissue specificity
Detected in all
NFIL3
ENSSSCG00000009592
ENSG00000165030
Nuclear factor, interleukin 3 regulated
Low tissue specificity
Detected in many
NGB
ENSSSCG00000002399
ENSG00000165553
Neuroglobin
Tissue enriched
Detected in many
brain:
35.2
NGF
ENSSSCG00000032417
ENSG00000134259
Nerve growth factor
Low tissue specificity
Detected in all
NGFR
ENSSSCG00000017548
ENSG00000064300
Nerve growth factor receptor
Tissue enhanced
Detected in many
vagus nerve:
28.9
NHLH1
ENSSSCG00000006384
ENSG00000171786
Nescient helix-loop-helix 1
Tissue enriched
Detected in many
brain:
30.1
NHLH2
ENSSSCG00000006744
ENSG00000177551
Nescient helix-loop-helix 2
Group enriched
Detected in some
brain:
15.3
retina:
13.9
NHS
ENSSSCG00000012151
ENSG00000188158
NHS actin remodeling regulator
Tissue enhanced
Detected in all
lens:
30.7
NHSL2
ENSSSCG00000012408
ENSG00000204131
NHS like 2
Low tissue specificity
Detected in many
NID1
ENSSSCG00000026819
ENSG00000116962
Nidogen 1
Tissue enhanced
Detected in many
lens:
103.6
NID2
ENSSSCG00000005030
ENSG00000087303
Nidogen 2
Tissue enhanced
Detected in many
lens:
131.6
NIPAL4
ENSSSCG00000017053
ENSG00000172548
NIPA like domain containing 4
Tissue enhanced
Detected in many
brain:
16.9
skin:
29.1
NKAIN2
ENSSSCG00000036607
ENSG00000188580
Sodium/potassium transporting ATPase interacting 2
Tissue enriched
Detected in some
brain:
44.6
NKAIN3
ENSSSCG00000034894
ENSG00000185942
Sodium/potassium transporting ATPase interacting 3
Tissue enhanced
Detected in all
brain:
28.0
NKD1
ENSSSCG00000039875
ENSG00000140807
Naked cuticle homolog 1
Low tissue specificity
Detected in many
NKG7
ENSSSCG00000003231
ENSG00000105374
Protein NKG7
Tissue enhanced
Detected in many
bone marrow:
28.4
lung:
28.3
NKX2-1
ENSSSCG00000001945
ENSG00000136352
Homeobox protein Nkx-2.1 isoform 2
Group enriched
Detected in some
lung:
22.4
thyroid gland:
86.5
NKX2-2
ENSSSCG00000040017
ENSG00000125820
NK2 homeobox 2
Tissue enriched
Detected in some
brain:
17.6
NKX2-8
ENSSSCG00000001944
ENSG00000136327
NK2 homeobox 8
Tissue enhanced
Detected in some
brain:
12.1
lens:
10.3
male glands:
5.4
NKX6-1
ENSSSCG00000009232
ENSG00000163623
NK6 homeobox 1
Tissue enhanced
Detected in some
brain:
11.8
mouth:
7.0
upper respiratory system:
23.9
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